Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3973 ATGGTGGTTGTATGTGAAGGTGTTTTGGGAAAGGAAGAAGGTGGTAAGGAGAATTTAGCATATATTGATAGTAAAAGAAGGGACGTTGGGGGAAGAGAGGAAAGAGGAGAAAAATGGAAAGAAGAGAGGTGCAGGTCAAAATTGAAACCTCAAATAAGCAAAAGCAAGGAAGGTTGGGATGGGAAGGGGCGTCTAAGTATGGGGTGTCGTCAACAAGGCCGCTCAAATCTCCCCTTTTTTCTCTCCCAGACAGACATGTTACCACTCCTTACCATTCCTCCTTCATTTCCTTCTTCAAACCTCAGACATGGCTACCTCTTCTTTTCTTCACCTTCTCTTCCTCTTCTTTTCCGCCTCTTTCCCATAGCCATTGCTAGCCTTCTGCGCAGGATCACCATCATGAATTGTTTCTCGTGTTTTACCTCCCAGAAAAGTAAGAAAAACCTTAACGAGGGGGAGGTTGAATCTGCACCACAGGATCCTATTTCTTCAAGAACACCGGATAATGGAAACCAAGTTCAGAATGCAAACATTCAAGCGCAAACATTCACTTTCCGAGAGCTGGCGACAGCAACCAAGAATTTTAAGCAGGAATGCCTGTTGGGTGAAGGTGGATTTGGCAGAGTGTACAAGGGCACCATTCCAGCGTCCGGGAAGGTGGTAGCTGTGAAGCAACTGGACCGAAATGGGATGAATGGCAGTAAGGAGTTTCTTACAGAGGTTGCGGTTTTAAGTAACCTGAACCATGAAAATCTGGTGAATCTGGTTGGTTATTGTGCTGATGGAGATCAGCGTCTTCTGGTGTATGAATTCATGCCAGGGGGTTCTGTATACGACCGTCTTTTTGAGCTTGAGGGAGGTAAGCCCCCATTGGATTGGTTCACCAGAATGAGAATTGCATCAGGTGCTGCGAGCGGACTAGAGTACTTGCACGACAAGGCCAATCCCCCAGTTGTGTACAAGGACTTGAAATCCTCAAACATCTTGCTCGATGATAATCTTAATCCAAAACTTTCTGATTTCGGACTCAACAAGCTTTCCGGGGGAGATAAGTCCAACCTTATATCTCCTGGAGTTACGGGTACCTACGGTTACTCTGCTCCCGAGTATACAAGAACAGGTCAGCTCACCTTGAAATCAGATGTCTATGGTTTTGGTGTTGTGTTGCTTGAGCTCATCACCGGACGACGAGCTATTGATACTACTAAGCCAAACGAGGAGCAAAATTTAGTTACATGGGCACAACCCTTGTTCAGAAATCCCAAACAGTTTCCAGAAATGGCAGATCCGCTTCTGAAGAAAAATTTCCCAGAAAAGGATCTAAATCAAGCCGTAGCGGTAGCAGCCATGTGCCTGCAGGAGGAAGAAGGGGCCCGTCCTTTGATGAGTGACGTGGTAACTGCACTGAGTTTCCTGTCCATGGTTCCGCCGGAGGTTATTCCCGCATCACAGTCGCCTGCCACAATGCCCCCTCAGGATGATGGTTCTGAGGGTGAGGATGATGCAAGTTATGAGAGCAAGAGCCAGAGCGAGAGTGAGAGCGAGAGTGAGAGTGAGAATGAGAAAAAGCAGGAATCCGATACCAAGCAGTTGTACTCCAAATCAAGCACCAAGAAATCAGGTCGCAAAAGCTGCTTCACAACAGAAGAAGAAAGCCATTCATCCAGCAAGAAATCACGTAACCTAAGCCACAAGAGCAGCAAGAAATCAAGCAACAGAGATTTGAAGCAGAAGAGCAGCAAGAAGTCAGGAGGGAAAGGGTCAAGCCGAAAAAGCAGTAGAAAATCATCATCGAGGACGAGCACAGAATCAGAGAATGGAGGAGGTGAGGGATTGCATGAGCGTGGAAGCGGTAGTATATCTCAAGGAAATATATCATTTGGACTCATCAGCAGTGGAGAAAGTGTTCAATCTGACCACAGCAGCAGCCGCAGCAGCAGCGGCAGAAGGTCCACAGAAGGGGTGGGCCGTTTGGAGCATGCCCATACCTCCAAACAACCTCTAAAAGATCACAACAGAGAACTTCTCTCCGCTTCCAGTGCTAAAGTATAA 2052 0.4693 MVVVCEGVLGKEEGGKENLAYIDSKRRDVGGREERGEKWKEERCRSKLKPQISKSKEGWDGKGRLSMGCRQQGRSNLPFFLSQTDMLPLLTIPPSFPSSNLRHGYLFFSSPSLPLLFRLFPIAIASLLRRITIMNCFSCFTSQKSKKNLNEGEVESAPQDPISSRTPDNGNQVQNANIQAQTFTFRELATATKNFKQECLLGEGGFGRVYKGTIPASGKVVAVKQLDRNGMNGSKEFLTEVAVLSNLNHENLVNLVGYCADGDQRLLVYEFMPGGSVYDRLFELEGGKPPLDWFTRMRIASGAASGLEYLHDKANPPVVYKDLKSSNILLDDNLNPKLSDFGLNKLSGGDKSNLISPGVTGTYGYSAPEYTRTGQLTLKSDVYGFGVVLLELITGRRAIDTTKPNEEQNLVTWAQPLFRNPKQFPEMADPLLKKNFPEKDLNQAVAVAAMCLQEEEGARPLMSDVVTALSFLSMVPPEVIPASQSPATMPPQDDGSEGEDDASYESKSQSESESESESENEKKQESDTKQLYSKSSTKKSGRKSCFTTEEESHSSSKKSRNLSHKSSKKSSNRDLKQKSSKKSGGKGSSRKSSRKSSSRTSTESENGGGEGLHERGSGSISQGNISFGLISSGESVQSDHSSSRSSSGRRSTEGVGRLEHAHTSKQPLKDHNRELLSASSAKV 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3973 683 PANTHER OS07G0668900 PROTEIN 136 475 - -
Dere01g3973 683 CDD STKc_IRAK 201 469 - -
Dere01g3973 683 Gene3D Transferase(Phosphotransferase) domain 1 272 475 - -
Dere01g3973 683 FunFam Serine/threonine-protein kinase PBS1 272 485 - -
Dere01g3973 683 SUPERFAMILY Protein kinase-like (PK-like) 181 493 IPR011009 -
Dere01g3973 683 MobiDBLite consensus disorder prediction 480 683 - -
Dere01g3973 683 MobiDBLite consensus disorder prediction 157 172 - -
Dere01g3973 683 Pfam Protein kinase domain 196 466 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g3973 683 ProSitePatterns Protein kinases ATP-binding region signature. 201 224 IPR017441 GO:0005524
Dere01g3973 683 SMART serkin_6 195 472 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g3973 683 FunFam probable serine/threonine-protein kinase RLCKVII 167 271 - -
Dere01g3973 683 MobiDBLite consensus disorder prediction 653 677 - -
Dere01g3973 683 ProSitePatterns Serine/Threonine protein kinases active-site signature. 318 330 IPR008271 GO:0004672|GO:0006468
Dere01g3973 683 Gene3D Phosphorylase Kinase; domain 1 160 271 - -
Dere01g3973 683 MobiDBLite consensus disorder prediction 567 581 - -
Dere01g3973 683 MobiDBLite consensus disorder prediction 617 652 - -
Dere01g3973 683 MobiDBLite consensus disorder prediction 501 529 - -
Dere01g3973 683 MobiDBLite consensus disorder prediction 148 172 - -
Dere01g3973 683 MobiDBLite consensus disorder prediction 543 558 - -
Dere01g3973 683 ProSiteProfiles Protein kinase domain profile. 195 472 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3973 Dere-ChrDere01 53533756 53536548 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3973 134 519 Glycoside Hydrolase AT3G07070 59.753 1.14e-161 469
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Dere01g3973 Pkinase 9.4e-44 CL0016