Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3972 ATGGCACGATATTCTCAAGGAGACGCACTTGTATATGTTTCCAATTCCAGTCGTGGATGTGGGCTAAATTTGAGTTCATACGCATACGTAGGATATGGGGAGTGCGGGGTGGTGCAGGAGGAGATGAGCCAATGGATGGATTTCCCCAACACAGTGTGCTGCCGAAACGCCCTCACAGTGTTAGCTCAAGCACTGGCCTTGCAGGCTCGTAACTCGCTTCAACTGGCTTCTCTGTTTATCTCCCAGAAAGAATGGGACACGTGCACCGACATGTTTCATCTGCAACAGCGCATGTCACCCAAATCATGCGGCTTCGATGACTTGCACTTGGGCGGCACCCCGAAATGCTCCAACGCTAGATTGCAGGATGTTCAGGGGCAGCCTTCCTACCTGAACGCCTTAGATAACTGCTCCCACTTTGATAATCCCTCTCAGCAATCTTGTGCAGATTGCGTAGCTGCCATATTAGGTGTCAGAGACTCCCTCTATGGCCAATTTGTGGGAAGCGACTATGACGCCGTCGAAATAGCCGTTTGCGGTGTAGCAGCTCTTGTTGCCCTTGCAGCTGGCAAGCCCGACGATCCTTCCATCCCTGACAAGTTCTTGCGCTGCTGGCCCCTTCCCCAAGTCCACAAAGCTGCTTCGGGGGTATACCTGCTAGAAGGGGTAACAGCAGTGATTGTATTGTCGTTGATCGTATTATTGGTGAAATATGTGTCCAAAAAGAAACCTCGGAAAGCAGTGACCTTGAAGGAGATAACGACGTGGTCGGGAATGTACTGGTTCTCGAAAGCTGAGATAGAGAACGCCATAAACCACCAGGGGAATGAAAGGAAGTGCCTGGGAAGAGGGAGTGCGGGATATGTATTCAAAGGGGTTCTTCCCAGCGGTCAAGTGGTGGCCATCAAGCACTTAAGCAAGACCAACAGCTCTGAGTCTTTCACTCGGGAGGTGGAGGGCCTTTCCAGGCTTCGCCATCCAAATTTGGTTTGCCTCTTTGGGTGTTGCGTGGAAGATGGCGAGAGATATTTAGTGTATGAGTACTGTGCAGAAGGCAACCTTGCTCAACATCTCTTGAGAAGAGACAGCCATCTGACATGGGAAACAAGAGTTAAGATTTTAAGGGACTGCTCCTTCGCACTCAAGTATCTCCACCATCACATGCAGGGCTGTGTTGTCCACAGAGATATTAAGCTCACAAACATACTTCTGACTGAAACTCTGCAAGCAAAACTGTCGGATTTTGGACTGGCAAAGATGATGGGGATGGAAGAGAGCAAAGTGTTTACGGATGTAAGAGGAACCATAGGGTATATGGATCCAGAGTACATGAGCAATGCCAAGTTAACCTGTGCCAGTGACATCTACAGTTTTGGAATAGTTGCCTTACAAATTCTATCAGGTCAGAAAGTCATAGAGTTGGATCTTGATGCCAGAGACCAGCTCACTAGGAAGGCAAGAGATGTAAGCATGGGAAGGCGTCCAATGTCAGATTTTGAAGACCCAAGGCTAAAGGGAGAAGTGAATAAGGCGGACTTTGAAGCCATCTTACAGATTGCAGTGCTGTGTGTTGCCAAATCCAGCAAAGGTCGCCCAACCATCGAGGTTGTCTTTGAGGAATTGGATAAGGCCTATAAGAACACTCTTGCTGAATCGAAAGCAAAGCTGGATCGGAGCACATCCGAAACTTCCACCTCGAGATCCTTAGATTTCATTCCTATTTGA 1725 0.4864 MARYSQGDALVYVSNSSRGCGLNLSSYAYVGYGECGVVQEEMSQWMDFPNTVCCRNALTVLAQALALQARNSLQLASLFISQKEWDTCTDMFHLQQRMSPKSCGFDDLHLGGTPKCSNARLQDVQGQPSYLNALDNCSHFDNPSQQSCADCVAAILGVRDSLYGQFVGSDYDAVEIAVCGVAALVALAAGKPDDPSIPDKFLRCWPLPQVHKAASGVYLLEGVTAVIVLSLIVLLVKYVSKKKPRKAVTLKEITTWSGMYWFSKAEIENAINHQGNERKCLGRGSAGYVFKGVLPSGQVVAIKHLSKTNSSESFTREVEGLSRLRHPNLVCLFGCCVEDGERYLVYEYCAEGNLAQHLLRRDSHLTWETRVKILRDCSFALKYLHHHMQGCVVHRDIKLTNILLTETLQAKLSDFGLAKMMGMEESKVFTDVRGTIGYMDPEYMSNAKLTCASDIYSFGIVALQILSGQKVIELDLDARDQLTRKARDVSMGRRPMSDFEDPRLKGEVNKADFEAILQIAVLCVAKSSKGRPTIEVVFEELDKAYKNTLAESKAKLDRSTSETSTSRSLDFIPI 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3972 574 Pfam Protein kinase domain 278 537 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g3972 574 Pfam SPARK 15 163 IPR043891 -
Dere01g3972 574 SMART serkin_6 275 546 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g3972 574 Gene3D Phosphorylase Kinase; domain 1 245 348 - -
Dere01g3972 574 Gene3D Transferase(Phosphotransferase) domain 1 350 568 - -
Dere01g3972 574 SUPERFAMILY Protein kinase-like (PK-like) 273 541 IPR011009 -
Dere01g3972 574 ProSiteProfiles Protein kinase domain profile. 275 545 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g3972 574 ProSitePatterns Serine/Threonine protein kinases active-site signature. 392 404 IPR008271 GO:0004672|GO:0006468
Dere01g3972 574 FunFam probable receptor-like protein kinase At5g59700 349 560 - -
Dere01g3972 574 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 214 546 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3972 Dere-ChrDere01 53528449 53531094 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3972 218 544 Receptor kinase-like Gene Family AT2G19230 35.843 1.51e-53 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-2 Dere01g3972 Pkinase 4.8e-46 CL0016