Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3968 ATGGCCAAAAGAGGCGTCTCAGAAACCGACACAGCTGCTGTTACGAATGCAAAAGCGTTGGATTTGAAGCACAAATTGCGGGGTCTTGTAAATATTATCTTGGACGGTGATAATTACCCGGTAGGCACAGTTGACGAGGCTATTGCGACGCTTTCTGCTCTCAAGGATTTGGAATATAACAGCTCCCTCCCACAGAAATTGGATGATTTGTCTATTCCTGCCGAATTTCGATGCCCCATTTCTAGAGAGCTAATGAGGGATCCTGTTATCTTGGCCACTGGACAGACTTATGATCGGCCATTTATCCAGAGGTGGTTAAATGAAGGCCACCGAACATGCCCTCAAACACAGCAAGTCCTTTCTCACTCCATCCTGACTCCCAATTACCTGGTCCGGGACATGATTTCACATTGGTGCAAGGAGAATGGAGTTGAACTGCCAAAGCCTGTTCGGGACATTGATGAAGAAGTTATAACTGATGCAGACAGAACCCATTTAAATTTATTGCTTAAAAAATTGTCATCAACCGTTTCTGACCAGAAAGAAGCTGCAAAAGAGCTCCGGCTGTTAACGAAGCGAATGCCCTCGTTTCGAATCCTCTTTAAGGAGTCCAGCGATGTGATATTACAGTTGCTCAGTCCATTATCACCTGGTACGGCTTGTATCCCTCCTGACCTGCATGAGGACTTGATCACAACTGTTTTAAATCTCTCAATTCATGACGACAATAAGAAAATGTTTGCTGAGAATGCAATGGTCATTCCTCTGCTAATTGAGTCCTTAAAATCTGGAACCATTCAAACAAGAAGTAATGCTGCCGCAGCTATCTTCACATTATCAGCACTTGATTCGAACAAGAGCATCATTGGAAAATCAGGAGCTATCAAACATTTGGTGGAGCTTTTAGACGAGGGACATCCATTAGCCATGAAAGATGCTGCCTCTGCCATATTCAACCTATGTCTCGTGCATGAAAATAAAGGAAGGACTGTCCGAGAAGGGGCTGTTCAGGTTATACTGAACAAGATCACGGACCAAATTTTAGTTGATGAGTTGTTGGCCATACTGGCACTTCTGTCTAGCCATCCAAAGGCTATTGAAGAAATGAGTGATCTGGGTGCTGTCCCCTTGTTGCTTGGAATTATAAGGGAGAGCACATCGGAACGTAGCAAGGAAAATTGTGTTGCAATCCTATATACAATCTGCTTCAACGACAGAACAAAATGGAAGGAAATTAGAGAAGAAGAAAAAGCCAAGGGTACATTGTCTGAACTTGCACAATGTGGGACTTCGAGGGCCAAAAGAAAGGCTAATGGGATTCTCGAGAGGCTCAATAGATCTCCCAACTTAACACACACTGCTTAG 1365 0.4381 MAKRGVSETDTAAVTNAKALDLKHKLRGLVNIILDGDNYPVGTVDEAIATLSALKDLEYNSSLPQKLDDLSIPAEFRCPISRELMRDPVILATGQTYDRPFIQRWLNEGHRTCPQTQQVLSHSILTPNYLVRDMISHWCKENGVELPKPVRDIDEEVITDADRTHLNLLLKKLSSTVSDQKEAAKELRLLTKRMPSFRILFKESSDVILQLLSPLSPGTACIPPDLHEDLITTVLNLSIHDDNKKMFAENAMVIPLLIESLKSGTIQTRSNAAAAIFTLSALDSNKSIIGKSGAIKHLVELLDEGHPLAMKDAASAIFNLCLVHENKGRTVREGAVQVILNKITDQILVDELLAILALLSSHPKAIEEMSDLGAVPLLLGIIRESTSERSKENCVAILYTICFNDRTKWKEIREEEKAKGTLSELAQCGTSRAKRKANGILERLNRSPNLTHTA 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3968 454 Pfam U-box domain 72 142 IPR003613 GO:0004842|GO:0016567
Dere01g3968 454 Gene3D - 159 451 IPR011989 -
Dere01g3968 454 PANTHER U BOX DOMAIN-CONTAINING 12 444 - -
Dere01g3968 454 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 293 335 IPR000225 GO:0005515
Dere01g3968 454 SUPERFAMILY ARM repeat 174 444 IPR016024 -
Dere01g3968 454 CDD RING-Ubox_PUB 73 125 IPR045210 -
Dere01g3968 454 SMART Ubox_2 75 138 IPR003613 GO:0004842|GO:0016567
Dere01g3968 454 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 145 IPR013083 -
Dere01g3968 454 Pfam Armadillo/beta-catenin-like repeat 285 321 IPR000225 GO:0005515
Dere01g3968 454 FunFam RING-type E3 ubiquitin transferase 71 145 - -
Dere01g3968 454 ProSiteProfiles U-box domain profile. 71 145 IPR003613 GO:0004842|GO:0016567
Dere01g3968 454 SUPERFAMILY RING/U-box 68 149 - -
Dere01g3968 454 SMART arm_5 240 281 IPR000225 GO:0005515
Dere01g3968 454 SMART arm_5 362 403 IPR000225 GO:0005515
Dere01g3968 454 SMART arm_5 282 322 IPR000225 GO:0005515
Dere01g3968 454 FunFam RING-type E3 ubiquitin transferase 156 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3968 Dere-ChrDere01 53505719 53507942 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3968 134 454 U-box Gene Family AT3G07360 59.146 1.79e-126 368