Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3954 ATGGAACCGAATGAAAACCAGCTCAGCTACTTCCACCACCAACAGCAGCAGAGCACCACCACTACCGTCACCCCCACGACCGCCGTCACCACCACATCCTCGCCTACCAATGGGCTGTTACCAAACGCTGATGGGTCCCACATGGTGTACCCTCATTCCGTGCCCTCTGCGGTGTCCTCTCAATTAGAACCCCCGAAGAGGAAGAGAGGGAGGCCAAGGAAGTACGGCACCCCTGAGCAAGCTCTAGCCGCCAAAAAAGCCGCTACGTCATCGTCTCACTCGTTCTCTCACAAGGATAAGAAGGACCGCGCTTTGGGCAGTCCCTCTTCTTCCTCTTCGTATACCGGCTCCTCGAAGAAATCCCAACTGTTTGCTTTAGGACAAGGCTTCACCCCACATGTGATTACTGTTGCTGCTGGTGAGGATGTTGGCCAAAAAATTATGTTGTTCATGCAACAAAGTAGGCGTGAAATGTGCATTCTGTCTGCATCTGGTTCCATCTCTAATGCCTCTCTCCGTCAGCCAGCAACATCTGGAGGAAATATTGCATATGAGGGTCGATTTGAGATTATTTCACTATCGGGTTCCTATGTCCGTACTGAACTTGGAGGGCGCACTGGTGGTCTCAGTGTGTGCTTATCTAGTCCTGATGGCCAAATCATAGGTGGAGGAGTTGGTGGACCCCTAAAAGCTGCTGGTCCAGTTCAGGTCATTGTTGGTACTTTTTTTCTGGACACCAAGAAGGATGCTGGTGCTGTTGTAAAAGGTGATGCTTCTGGGAGCAAGTTGGCATCATTGGTTGGGGGAGAACCAGTATCAAGTTTAGGTTTCCACCCAGGAATTGAACCTTCCGGTGGTCATCCAATCCATGGAAATGATGACCATCAGGCTATCGTTGGGAGTCCTTTCATGATGCAACAACGCAGTGTGCATGTGACACCTTCCCCGCCCACAGACTGGGGGGGTCGTCCTGATTCCAGAAATGCTGGCTATGAGCTGACAGGAAGAACAGGGCATGGGGCTCACCAGTCTCCAGAGAATGGAGATTATCTAACATGA 1059 0.5118 MEPNENQLSYFHHQQQQSTTTTVTPTTAVTTTSSPTNGLLPNADGSHMVYPHSVPSAVSSQLEPPKRKRGRPRKYGTPEQALAAKKAATSSSHSFSHKDKKDRALGSPSSSSSYTGSSKKSQLFALGQGFTPHVITVAAGEDVGQKIMLFMQQSRREMCILSASGSISNASLRQPATSGGNIAYEGRFEIISLSGSYVRTELGGRTGGLSVCLSSPDGQIIGGGVGGPLKAAGPVQVIVGTFFLDTKKDAGAVVKGDASGSKLASLVGGEPVSSLGFHPGIEPSGGHPIHGNDDHQAIVGSPFMMQQRSVHVTPSPPTDWGGRPDSRNAGYELTGRTGHGAHQSPENGDYLT 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3954 352 MobiDBLite consensus disorder prediction 1 117 - -
Dere01g3954 352 SUPERFAMILY AF0104/ALDC/Ptd012-like 129 242 - -
Dere01g3954 352 MobiDBLite consensus disorder prediction 308 352 - -
Dere01g3954 352 ProSiteProfiles PPC domain profile profile. 127 267 IPR005175 -
Dere01g3954 352 Gene3D - 132 254 - -
Dere01g3954 352 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 17 254 IPR039605 GO:0003680
Dere01g3954 352 Pfam Plants and Prokaryotes Conserved (PCC) domain 132 242 IPR005175 -
Dere01g3954 352 CDD DUF296 131 242 IPR005175 -
Dere01g3954 352 MobiDBLite consensus disorder prediction 1 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3954 Dere-ChrDere01 53334081 53340178 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3954 25 350 AT-hook Motif Nuclear Localized (AHL) Family AT3G04590 54.270 8.76e-98 294