Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3952 ATGGCAGTCTCTAGTTACCTGTTCTGTCATGAATCTTGGACCTGTATAAAAGCCAGTTTAGCAGAACACTCACATCGCATCAGCATTGCTCGTCTCTGGACAAGACTCCTAGTGGTGATCAAGATGTCAAATCCGAAGGTGTTTTTTGACATTTTAATTGGAAAGATGAAAGCTGGTCGAATAGTAATGGAGCTATTCGCAGATGTCACCCCAAAGACTGCTGAAAACTTCCGAGTTCTCTGCACCGGCGAAAAGGGGATTGGAAATTTTGGGAAGCCTTTGCACTACAAGGGATCCAAATTTCACCGAATTATTCCACAGTTCATGTGTCAGGGAGGAGATTTCACTAAAGGAAATGGAACTGGAGGAGAGTCAATTTATGGCTCGAAATTTGCTGACGAGAATTTCAAGCTGAAGCATACAGGGCCTGGTATTCTCTCAATGGCAAATGCTGGACCCAATACAAATGGTTCTCAGTTCTTTATATGTACTACAAAGACAGAATGGCTTGATGGTAAGCATGTTGTATTCGGAAAGGTTGTGGATGGCTACAGTGTAGTCAAGGAGATGGAGAAGGTGGGTTCACAGAGTGGTAGGACGTCAGAACCAGTTGTAATTGAAGATTGTGGTCAGATAGCAGATAATTGA 648 0.4306 MAVSSYLFCHESWTCIKASLAEHSHRISIARLWTRLLVVIKMSNPKVFFDILIGKMKAGRIVMELFADVTPKTAENFRVLCTGEKGIGNFGKPLHYKGSKFHRIIPQFMCQGGDFTKGNGTGGESIYGSKFADENFKLKHTGPGILSMANAGPNTNGSQFFICTTKTEWLDGKHVVFGKVVDGYSVVKEMEKVGSQSGRTSEPVVIEDCGQIADN 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3952 215 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 96 113 IPR020892 GO:0003755|GO:0006457
Dere01g3952 215 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 48 211 IPR002130 GO:0000413|GO:0003755
Dere01g3952 215 PIRSF Peptidylpro_ismrse 32 215 IPR024936 GO:0003755
Dere01g3952 215 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 65 80 IPR002130 GO:0000413|GO:0003755
Dere01g3952 215 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 172 187 IPR002130 GO:0000413|GO:0003755
Dere01g3952 215 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 101 113 IPR002130 GO:0000413|GO:0003755
Dere01g3952 215 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 159 171 IPR002130 GO:0000413|GO:0003755
Dere01g3952 215 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 144 159 IPR002130 GO:0000413|GO:0003755
Dere01g3952 215 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 55 210 IPR002130 GO:0000413|GO:0003755
Dere01g3952 215 Gene3D - 38 215 IPR029000 -
Dere01g3952 215 SUPERFAMILY Cyclophilin-like 35 212 IPR029000 -
Dere01g3952 215 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 46 212 - -
Dere01g3952 215 FunFam Peptidyl-prolyl cis-trans isomerase 41 213 - -
Dere01g3952 215 CDD cyclophilin_ABH_like 45 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3952 Dere-ChrDere01 53293708 53295841 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3952 59 206 U-box Gene Family AT5G67530 47.333 1.01e-31 119