Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3949 ATGGATCCATCATCCTCCTTTATTCTCGACCCTACGTGTGAGAACCACCAACCCCTTCCCTTCAACGAAAACGACTCCCAGGAAATGCTTCTGTACCAACTTCTGGTAGAGGCAGCCCCAGACTCCTCCTCTGCAGCAGCAGAATCATCGTCTCATTCAAGAGAGCAGGAAGAGGTGAGGTCTGATAATATGAGAGGAGGAGTTGCATACAGAGGGGTGCGAAGGAGGCCGTGGGGGAAATATGCGGCAGAGATAAGAGACTCGACGAGGAATGGAGTGAGAGTGTGGTTAGGAACATTTGACACAGCAGAGGCTGCAGCTTTGGCTTACGACCAAGCAGCCTTAGCAATGCGAGGTGCGAACGCTGTTCTGAATTTCCCCACCCACCTCGTTCACCAATCCCTTCAGAACATGGACTGTGCCTTCCATCAAGGCTGCTCTCCCGTTTTGGAACTAAAGAAGAGGCACTCCATTCACAGAAAGTCCCACTCCATCAACGTCAAAATCGATATGCAGCAGCAGCAGCAGCTTGTGTTGCAGGATTTAGGGGCTGACTATTTGGACTATCTTCTTTCTTTGTCCCACCACTCTACCTAG 597 0.5075 MDPSSSFILDPTCENHQPLPFNENDSQEMLLYQLLVEAAPDSSSAAAESSSHSREQEEVRSDNMRGGVAYRGVRRRPWGKYAAEIRDSTRNGVRVWLGTFDTAEAAALAYDQAALAMRGANAVLNFPTHLVHQSLQNMDCAFHQGCSPVLELKKRHSIHRKSHSINVKIDMQQQQQLVLQDLGADYLDYLLSLSHHST 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3949 198 CDD AP2 70 129 IPR001471 GO:0003700|GO:0006355
Dere01g3949 198 Pfam AP2 domain 70 119 IPR001471 GO:0003700|GO:0006355
Dere01g3949 198 FunFam Ethylene-responsive transcription factor 2 68 128 - -
Dere01g3949 198 MobiDBLite consensus disorder prediction 1 22 - -
Dere01g3949 198 MobiDBLite consensus disorder prediction 43 63 - -
Dere01g3949 198 PANTHER DNA-BINDING DOMAIN 45 191 IPR044808 GO:0003700|GO:0009873
Dere01g3949 198 PRINTS Ethylene responsive element binding protein signature 93 109 IPR001471 GO:0003700|GO:0006355
Dere01g3949 198 PRINTS Ethylene responsive element binding protein signature 70 81 IPR001471 GO:0003700|GO:0006355
Dere01g3949 198 SMART rav1_2 69 133 IPR001471 GO:0003700|GO:0006355
Dere01g3949 198 Gene3D AP2/ERF domain 69 129 IPR036955 GO:0003700|GO:0006355
Dere01g3949 198 SUPERFAMILY DNA-binding domain 70 128 IPR016177 GO:0003677
Dere01g3949 198 ProSiteProfiles AP2/ERF domain profile. 69 127 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3949 Dere-ChrDere01 53235500 53236096 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3949 19 197 AP2-EREBP Transcription Factor Family AT3G23240 47.644 3.71e-55 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere01g3949 AP2 4.3e-15 CL0081