Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3948 ATGGAGCAATCACTTCTGGATGACATAATCAACCGTCTCCTTGAAGTTCGCGGCCGCCCAGGGAAGCAGGTTCAGCTGTCGGAGTCGGAGATCCGTCAGCTTTGCGTAGTTTCAAGGGATATTTTCTTGCGACAACCTAATTTATTGGAGCTTGAAGCACCCATTAAGATTTGTGGGGACGTACATGGTCAATATTCTGATCTTTTAAGGCTCTTTGAGTATGGTGGATTACCTCCTCATGCCAACTATTTATTTTTGGGGGATTATGTGGACCGCGGGAAGCAAAGTTTGGAAACAATATGCCTTCTCCTTGCCTATAAAATAAAATATCCTGAGAACTTTTTCCTGTTGAGGGGGAACCATGAATGTGCTTCTATAAACCGTATTTATGGATTTTACGATGAGTGTAAGAGAAGGTTCAGTGTAAGGTTATGGAAGACATTTACCGAGTGCTTCAACTGTCTACCTGTGGCTGCCCTTATTGATGAAAAGATTCTGTGTATGCATGGGGGACTTTCTCCTGACCTGCATAATTTGGATCAGATTAGAAATCTACAGCGTCCAACTGATGTTCCAGATACAGGTTTGCTTTGTGATCTCCTTTGGTCAGACCCGAGCAAAGATGTTCAAGGTTGGGGAATGAATGACAGGGGAGTTTCATATACATTTGGTGCTAATAAGGTCTCAGAATTTCTTCAGAAGCAAGATCTGGATCTTATTTGCCGTGCTCATCAGGTTGTGGAGGATGGTTATGAGTTTTTTGCTGATCGACAGCTAGTAACAATATTTTCTGCTCCTAATTATTGTGGAGAGTTTGACAATGCTGGTGCCATGATGAGTGTTGATGAGACACTAATGTGCTCTTTCCAAATTTTGAAGCCAGCAGATAAAAAACCGAAGACCAATTTTGGAAGTAGTACAACAACTGCTAAGCCAGGAAATTCTCCAGCCAGTATAAAGTCCTTCCTGGGTGTATGA 978 0.4233 MEQSLLDDIINRLLEVRGRPGKQVQLSESEIRQLCVVSRDIFLRQPNLLELEAPIKICGDVHGQYSDLLRLFEYGGLPPHANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFSVRLWKTFTECFNCLPVAALIDEKILCMHGGLSPDLHNLDQIRNLQRPTDVPDTGLLCDLLWSDPSKDVQGWGMNDRGVSYTFGANKVSEFLQKQDLDLICRAHQVVEDGYEFFADRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPADKKPKTNFGSSTTTAKPGNSPASIKSFLGV 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3948 325 PRINTS Serine/threonine phosphatase family signature 83 110 IPR006186 GO:0016787
Dere01g3948 325 PRINTS Serine/threonine phosphatase family signature 150 176 IPR006186 GO:0016787
Dere01g3948 325 PRINTS Serine/threonine phosphatase family signature 258 274 IPR006186 GO:0016787
Dere01g3948 325 PRINTS Serine/threonine phosphatase family signature 54 81 IPR006186 GO:0016787
Dere01g3948 325 PRINTS Serine/threonine phosphatase family signature 179 206 IPR006186 GO:0016787
Dere01g3948 325 PRINTS Serine/threonine phosphatase family signature 236 256 IPR006186 GO:0016787
Dere01g3948 325 PRINTS Serine/threonine phosphatase family signature 116 140 IPR006186 GO:0016787
Dere01g3948 325 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 9 301 - -
Dere01g3948 325 Gene3D - 1 305 IPR029052 -
Dere01g3948 325 MobiDBLite consensus disorder prediction 299 325 - -
Dere01g3948 325 Pfam Serine-threonine protein phosphatase N-terminal domain 6 52 IPR031675 -
Dere01g3948 325 ProSitePatterns Serine/threonine specific protein phosphatases signature. 117 122 IPR006186 GO:0016787
Dere01g3948 325 Pfam Calcineurin-like phosphoesterase 54 246 IPR004843 GO:0016787
Dere01g3948 325 SUPERFAMILY Metallo-dependent phosphatases 17 298 IPR029052 -
Dere01g3948 325 SMART pp2a_7 26 296 IPR006186 GO:0016787
Dere01g3948 325 CDD MPP_PP1_PPKL 6 294 - -
Dere01g3948 325 FunFam Serine/threonine-protein phosphatase 52 305 - -
Dere01g3948 325 MobiDBLite consensus disorder prediction 300 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3948 Dere-ChrDere01 53228845 53232821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3948 33 239 Calmodulin-binding Proteins AT5G63870 30.242 9.72e-27 105