LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere01g3947	ATGGGCGAACTCCTGAAGCAGCAGTACCAACTGTGCGATGAGATCGGCCGCGGGCGATTCGGCACCATCTTCCGCTGCATTCATCCCGATTCCAACCAACTCTACGCCTGCAAACTCATCGACAAGCGCCTTCTCACTGATTCCACCGATCGCCATTGCCTCGACAACGAACCCAAGTACATGACTCTCCTATCTCCCCACCCCAATATCATTCAAATCTTCGACGTCTTCGAGAGCGACGATTTCTTATCCATGGTCATCGAGCTCTGCCAGCCCCTTACCCTCTTCGACCGCATCATTAATTGCTCTTTGCCCGAGCCGGAAGCGGCTTCTATCATGAAGCAGCTACTCGAAGCGCTTGCGCATTGCCACCGACTCGGCATCGCTCACAGAGACGTTAAGCCTGACAATCTCTTGTTTGATTCCAGGAATACTCTTAAGGTTGCCGACTTTGGGTCGGCGGAGTGGTTCGGTGATGGAAGAAGCATGAGTGGGGTGGTGGGTACTCCGTATTATGTGGCGCCGGAGGTTTTACTGGGAAGGGAATACAATGAAAAAGTAGATGTGTGGAGTAGCGGTGTGATTTTGTACATAATGTTGGCTGGGATTCCACCCTTCCACGGAGAATCAGCAACTGAGATATTTGAGGCTGTTGTCAGGGCCAATCTGAGATTCCCCACTAGGGTTTTTAGGTCTGTGTCTCCCGCCGCTAAGGATCTGCTCAGGAAGATGATCTGTAGGGATGCTTCGAGGAGATTATCGGCAGAGCAAGCCTTGAGGCACCCATGGATCCTGAGTGGAGGAGAGACAACTGATCTGACTTGA	825	0.52	MGELLKQQYQLCDEIGRGRFGTIFRCIHPDSNQLYACKLIDKRLLTDSTDRHCLDNEPKYMTLLSPHPNIIQIFDVFESDDFLSMVIELCQPLTLFDRIINCSLPEPEAASIMKQLLEALAHCHRLGIAHRDVKPDNLLFDSRNTLKVADFGSAEWFGDGRSMSGVVGTPYYVAPEVLLGREYNEKVDVWSSGVILYIMLAGIPPFHGESATEIFEAVVRANLRFPTRVFRSVSPAAKDLLRKMICRDASRRLSAEQALRHPWILSGGETTDLT	274

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere01g3947	274	CDD	STKc_CAMK	8	263	-	-
	Dere01g3947	274	Pfam	Protein kinase domain	9	264	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere01g3947	274	FunFam	Phosphoenolpyruvate carboxylase kinase 1	1	91	-	-
	Dere01g3947	274	SUPERFAMILY	Protein kinase-like (PK-like)	7	266	IPR011009	-
	Dere01g3947	274	Gene3D	Transferase(Phosphotransferase) domain 1	94	272	-	-
	Dere01g3947	274	PANTHER	SERINE/THREONINE-PROTEIN KINASE	6	266	-	-
	Dere01g3947	274	Gene3D	Phosphorylase Kinase; domain 1	2	91	-	-
	Dere01g3947	274	SMART	serkin_6	9	264	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere01g3947	274	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	128	140	IPR008271	GO:0004672\|GO:0006468
	Dere01g3947	274	ProSitePatterns	Protein kinases ATP-binding region signature.	15	38	IPR017441	GO:0005524
	Dere01g3947	274	FunFam	Phosphoenolpyruvate carboxylase kinase 2	1	274	-	-
	Dere01g3947	274	ProSiteProfiles	Protein kinase domain profile.	9	264	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere01g3947	Dere-ChrDere01	53224169	53225106	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere01g3947	3	272	EF-hand Containing Proteins	AT1G50700	39.416	8.98e-73	229

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CDPK	Dere01g3947		Pkinase	4.6e-72	CL0016