Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3942 ATGGGGACAGAACTCATGAGAACATGTGTTCAAGAAGATAACGATGAGTTTCCATCAGTTCCGCCAGGCTTTGAGTCATATATGTCTTCCTCACTGAATAGGATGGAAGACGATGGGAAACAGAATGATAAAAACATCATCAGTTGTTCATCCTCTACACCTGTTTCTAAATCACAGTCAATTCAAGTTAGTGATACTGCAAAAGTTCCTAGGTCCCTTCGACGAAGACGATGGATTAACCACAGACTGTATGATAACAGTTCAGAGGAAGACTCTGATTCTGAGCAGCTAGATCAAGTTATTGCCAGATGGAGACGAGAAGATGCTTGCAGGCCCACCCTTGAGGATGCTCCTGTTTTTTACCCAACTGAAGAGGAGTTTCAGGATACTATGAAATATATATCAAGTATTTGTTCCAGAGCAGAACCATATGGTATCTGTCGCATTGTTCCCCCTTCTTCCTGGAAGCCCCCCTGTCCTCTCATGGGAAAAAAATTATGGGAGGGTTCTAAATTTGCTACTCGTGTCCAGAGGATTGATAGACTTCAGAATCGTGGTTCAATGAGAAAGATGTCAAGGATTCATATTAATACTAAAAGGAAAAGGAGAAGATGCACAAGAATGGGGGTGGATAATGGAAGTAGTAGAGGACCTAATGCAGGATTTTGTGAGATTGAAAGACCGTTTGGGTTTGAACCTGGTCCAGAATTTACTTTGGAAACATTTCAAAGATATGCAGATGATTTTAAGGCCCAATACTTCAGAAATAGCGAGAGTATATCTAATTTGGGAGGTAATACAACAGTTTTAAAAGGATGGGAGCCTTCTATGGAGGACATCGAGGGTGAATATTGGCGGATGGTAGAGAGACCTACTGAAGAAATTGAGGTGCTTTATGGAGCTGACCTAGAAACTGGGGCTTTTGGGAGTGGTTTTCCTAGAAAGCTCAGCGAACATGTGGAGGATCACCATTTATATTCATTGAATTACATGCATTGGGGTGCTCCAAAAATGTGGTATGGTGTGCCAGGCAAAGATGCTTGCAAATTGGAAGGGGCCATGAGAAAGCATTTGCCAGACCTTTTTAAAGAACAACCTGACTTACTTCATAAGCTGGTGAGTAATAGTCGTTCCACACAAATTTCATTTGTTCAGGATCTTGCACATGGGGTTCACTTATTTGGTCTTGTTTCCATAGTCTTAAGAGAGAGGTCACTCAGCTTTCTCCTTCTATCCTTAAGTCTGAAGGAGTACCTGTCTATAGAGGCAGTTAATGTAGCTCCAGTTGACTGGCTGCCCCATGGGCAGATTGCCATTGAGCTATACCAGGAGCAGGGGCGCAAGACTTCTATATCTCATGATAAATTGTTGCTTGGTGCTGCTAGGGAAGCAGTACGAGCACAGTGGGAGCTAATTTTGCTGAAGAAGAATACTTCAGGTAATCTAGGATGGAAAGATGTCTGCGGAAAGGATGGTCTTCTTGCAAAAGCACTGAAGATGCGTGTCGAGATGGAACAATTAAGGAGGGAATTTCTCTGCAGTTCTTCACGGGCATTGAAAATGGAAAGCGATTTTGATGCCACATGTGAAAGGGAATGCAGTGTTTGCTATTTTGATTTACACTTATCTGCTGCTGGTTGCCATTGTTCCCCAGACCGGTATGCTTGCTTGGATCATGCAAAGCAATTCTGTTCATGTGATTCAGAATCCAAATTCTTCCTCTTTCGTTATGATATTAGTGAATTATATAGCCTTGTTGAGGCATTGGAAGGAAAAGTAAGTGCAGTACAAAGATGGGCAAACTTAGATCTTGGGGTGGCACTAAGTTCTTGCATCTCAAAAGACGATAGCCAATTCAGTAACTTATTTCAGTCTTCAAAGGAAACGATGCTCCACAAATTGAAATTAGAGTCCTCAAACTTGTCTGGTTCTTCAAGTGGCACTGTGCATAAAGAGATGGCATTGCATCCATCAGTTGTTTCTATTGAAGATTCTAATTTGATAGATGTCCCAATCGAGAATCTGATGAATTCAGCAAAAAGCATTGAGAAGAGTTATATACAACAGAGAAAATCAGCAGATGTGTCTCCCTTGGGTCATTTAAAGGAACTATCTATGTCTAATAACTTGACACCTGCTTGTGTGATGAGTAATCATGAGACACATCCCAAGAAAGAATCTATTATTTGCAGATCAAAGGAGAGGAACCCTGTTTGTCAGTTGGCTAAAGACAACACATCATATTCACTACCTCTTCCTCTAGCTCAACACGGTCTGAAGAAAACTTCGCCATACAGGCATGACAATGTAATACTTCTTAGTGATGATGAAACTGATGAACTGAAGATGACTGAAACATCTAGTGGGAAGGAGCTATCTCAAAGGCTTATGGGTTCTATTGATAAATTAAACCTGTGTAATTATAGAGAAGATCCAGAAATGACTATCCCTGTGACAGATGCTGCTGTAAAGGTTGAGAAGGATGTGCCTCATGATGATATGAGTTCTGATTCAACTTATCATTTGCATCTGAAACCGGAACATCGCATAATTAAGGGGCCAGTTTTAGGTTCTACCCCTGTAGATATTTCTTGCAATATAGGTTATGCTAGTGCAGGATCAGTCAGAAACGTTCAGGCTTCCTCAACAGGTGAGAGGGTTCATTGTCTGGATTCGTCAGAGAGTAGTCCTCAGAATCCTCTGCATTCTGGCACTGTCAAGCCTAAGAATGAGGATAACCATGAGAAGATTGGAGGATGTGGCGCTTCTAAAATAGCAGATAATGCTAGAGCTGGTAATGGAAACTTGTCTTGCAGTCCAAACAATTTGGGAAGGTACTACCGTCAGAAAGGTCCTCGTATTGCAAAGGTTGTCCGGCGTATTAACTGCAATGTTGAACCTCTAGAATTTGGAGTTGTGCTTTCTGGAAAGTCATGGTGCAACAGCCAGTCTATATTTCCAAAGGGGTTTAGATCCCGAGTAAGATACATAAATGCCTTAGATCCAACCAGTATGTGTTATTATATTTCGGAAATTCTTGATGCTGGACGTGACAGACCTCTGTTTATGGTGTCGTTGGAACATCATCCAAGTGAGGTCTTCATTCATATTTCAGTTGTGAGATGCTGGGAACTGGTAAGAGAGAGAGTGAATCAGGAGATCACAAAGCAACATAAGCTGGGAAGAAAGGACCTTCCTCCTTTACAGCCTCCTGGCAGCCTTGATGGCTCTGAAATGTTTGGTTTTTCTTCACCAGCGATAGTGCAGGCTATCGAGGCATTGGATCAAAGCCGAGTCTGTAAGGAATATTGGGATTCCCGCCCTTACTCCCGTCCTCAAGGGCAGATTCAGCAAGCTTCTCAACCCAAAGACGAAGGTGGAAATGGTCAAGGGGTCCTCAATAATCAGCTCATGCCTGTTAGAGTTGATGCAGGATTAAGGAGCCTAATTAAAAAGGCCAACGCACAAGAATTGAACTGGTTACGCAACATTCTTTGTGACAATAGGTTAGCAGCTGATGGCAGCCTAATTGCTAAATTTCTCAACGAAGAGATCAGCAGTCGTCCTACATGA 3573 0.4212 MGTELMRTCVQEDNDEFPSVPPGFESYMSSSLNRMEDDGKQNDKNIISCSSSTPVSKSQSIQVSDTAKVPRSLRRRRWINHRLYDNSSEEDSDSEQLDQVIARWRREDACRPTLEDAPVFYPTEEEFQDTMKYISSICSRAEPYGICRIVPPSSWKPPCPLMGKKLWEGSKFATRVQRIDRLQNRGSMRKMSRIHINTKRKRRRCTRMGVDNGSSRGPNAGFCEIERPFGFEPGPEFTLETFQRYADDFKAQYFRNSESISNLGGNTTVLKGWEPSMEDIEGEYWRMVERPTEEIEVLYGADLETGAFGSGFPRKLSEHVEDHHLYSLNYMHWGAPKMWYGVPGKDACKLEGAMRKHLPDLFKEQPDLLHKLVSNSRSTQISFVQDLAHGVHLFGLVSIVLRERSLSFLLLSLSLKEYLSIEAVNVAPVDWLPHGQIAIELYQEQGRKTSISHDKLLLGAAREAVRAQWELILLKKNTSGNLGWKDVCGKDGLLAKALKMRVEMEQLRREFLCSSSRALKMESDFDATCERECSVCYFDLHLSAAGCHCSPDRYACLDHAKQFCSCDSESKFFLFRYDISELYSLVEALEGKVSAVQRWANLDLGVALSSCISKDDSQFSNLFQSSKETMLHKLKLESSNLSGSSSGTVHKEMALHPSVVSIEDSNLIDVPIENLMNSAKSIEKSYIQQRKSADVSPLGHLKELSMSNNLTPACVMSNHETHPKKESIICRSKERNPVCQLAKDNTSYSLPLPLAQHGLKKTSPYRHDNVILLSDDETDELKMTETSSGKELSQRLMGSIDKLNLCNYREDPEMTIPVTDAAVKVEKDVPHDDMSSDSTYHLHLKPEHRIIKGPVLGSTPVDISCNIGYASAGSVRNVQASSTGERVHCLDSSESSPQNPLHSGTVKPKNEDNHEKIGGCGASKIADNARAGNGNLSCSPNNLGRYYRQKGPRIAKVVRRINCNVEPLEFGVVLSGKSWCNSQSIFPKGFRSRVRYINALDPTSMCYYISEILDAGRDRPLFMVSLEHHPSEVFIHISVVRCWELVRERVNQEITKQHKLGRKDLPPLQPPGSLDGSEMFGFSSPAIVQAIEALDQSRVCKEYWDSRPYSRPQGQIQQASQPKDEGGNGQGVLNNQLMPVRVDAGLRSLIKKANAQELNWLRNILCDNRLAADGSLIAKFLNEEISSRPT 1190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3942 1190 Gene3D Cupin 318 397 - -
Dere01g3942 1190 Gene3D Cupin 102 317 - -
Dere01g3942 1190 ProSiteProfiles FYR domain FYRC motif profile. 1017 1107 IPR003889 GO:0005634
Dere01g3942 1190 MobiDBLite consensus disorder prediction 1110 1133 - -
Dere01g3942 1190 Coils Coil 490 510 - -
Dere01g3942 1190 SMART cupin_9 252 443 IPR003347 -
Dere01g3942 1190 Pfam C5HC2 zinc finger 533 585 IPR004198 -
Dere01g3942 1190 ProSiteProfiles JmjN domain profile. 117 158 IPR003349 -
Dere01g3942 1190 PANTHER LYSINE-SPECIFIC DEMETHYLASE 319 382 - -
Dere01g3942 1190 MobiDBLite consensus disorder prediction 1109 1133 - -
Dere01g3942 1190 SUPERFAMILY Clavaminate synthase-like 234 373 - -
Dere01g3942 1190 ProSiteProfiles FYR domain FYRN motif profile. 957 1015 IPR003888 GO:0005634
Dere01g3942 1190 SMART JmjN_1 116 157 IPR003349 -
Dere01g3942 1190 MobiDBLite consensus disorder prediction 886 921 - -
Dere01g3942 1190 Pfam F/Y-rich N-terminus 970 1012 IPR003888 GO:0005634
Dere01g3942 1190 Gene3D - 964 1101 - -
Dere01g3942 1190 MobiDBLite consensus disorder prediction 886 906 - -
Dere01g3942 1190 FunFam Putative lysine-specific demethylase JMJ16 963 1101 - -
Dere01g3942 1190 SMART fyrn_3 971 1015 IPR003888 GO:0005634
Dere01g3942 1190 Pfam JmjC domain, hydroxylase 319 377 IPR003347 -
Dere01g3942 1190 Pfam jmjN domain 118 151 IPR003349 -
Dere01g3942 1190 SMART fyrc_3 1021 1115 IPR003889 GO:0005634
Dere01g3942 1190 Pfam F/Y rich C-terminus 1019 1103 IPR003889 GO:0005634
Dere01g3942 1190 Gene3D Cupin 418 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3942 Dere-ChrDere01 53190568 53197535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3942 1 1188 JUMONJI Transcription Factor Family AT1G08620 45.644 0.0 957
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Dere01g3942 FYRC 6e-20 No_clan