Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3936 ATGGTGAGGACTCCTTGTTGTGAGAAGATGGGGTTGAAGAAGGGACCGTGGACTCCTGAAGAAGATCAGATTTTGATTTCTTATATTCAAAGATATGGCCATGGAAACTGGCGGGCTCTTCCTAAACAGGCTGGTTTGTTGAGGTGTGGAAAAAGTTGCAGACTTCGTTGGATAAATTACTTGAGGCCAGATATAAAAAGAGGGAAATTCAGCAAGGAAGAAGAAGAAACCATCCTCAAACTACATCAAATTCTTGGAAATAGATGGTCTGCTATTGCGGCGAGATTACCAGGACGAACAGATAATGAAATCAAGAATTTTTGGCACACCCACTTGAAGAAGAGGCTTGAAAGACGTGAAGTGCACAATGTCAGTGCATCCTCTTATGCGCAAGCATCTTCAAGTACAGGGGCTCTGGTGCCGATGCCTCAGATAGTGGTAGCCACGGATGCATCAAGTGCTGCTAATTCTGGTTTCGCAGGGAAAGTTCTGATGAATAGCAATGATGGTTTAGCGTCAAGGAGATGTCCAGCTACAATAGACCCAGGATTTCACTGCGCGCTCTCTTCTGATACGTCAGGAGAAACCATGGGCAGTCATAGTTCTGATAAGATCAGTGAAGAAATGGAATTTTGGTACAATCTATTCATGAAAGCAGGGCAACCGTCACATGGGCATGAAAATTTATCGCAGATTGCATGA 702 0.4402 MVRTPCCEKMGLKKGPWTPEEDQILISYIQRYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGKFSKEEEETILKLHQILGNRWSAIAARLPGRTDNEIKNFWHTHLKKRLERREVHNVSASSYAQASSSTGALVPMPQIVVATDASSAANSGFAGKVLMNSNDGLASRRCPATIDPGFHCALSSDTSGETMGSHSSDKISEEMEFWYNLFMKAGQPSHGHENLSQIA 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3936 233 FunFam MYB transcription factor 69 138 - -
Dere01g3936 233 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 182 - -
Dere01g3936 233 CDD SANT 69 112 IPR001005 -
Dere01g3936 233 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Dere01g3936 233 CDD SANT 16 61 IPR001005 -
Dere01g3936 233 Gene3D - 68 136 - -
Dere01g3936 233 FunFam MYB-related transcription factor 13 66 - -
Dere01g3936 233 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Dere01g3936 233 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Dere01g3936 233 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Dere01g3936 233 SMART sant 66 114 IPR001005 -
Dere01g3936 233 SMART sant 13 63 IPR001005 -
Dere01g3936 233 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Dere01g3936 233 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Dere01g3936 233 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Dere01g3936 233 Gene3D - 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3936 Dere-ChrDere01 53145007 53146034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3936 1 216 MYB Transcription Factor Family AT2G31180 48.347 4.88e-76 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere01g3936 Myb_DNA-binding 1.5e-15 CL0123