Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3931 ATGTTCTTACTTCTTCCTTCTATCATTGCCTCCTTTTCTCTGAATAGAAGTCAACAGCTTGCCGTGGACGTGATCCCAATCACACGGCTCAAAACTAACAACAACATTCCCGAGCTACAGCGTAGTATTTTCTCTGTTTTCCAAGGGAATTTCCCGACAATCACAAGGGTCAATTACAAAAGAAGCCTTCTGACATTCAGCCTACTTTTCATATTGACATCAGGGCAGACAAAGCTGAGTCACTTGGGAGACTTCAGGGTAATGTCTTCATCTTTTCCTTTTCTTCCCACTCATATGGAGGACAAGTATATGAAACCTGTAGATTCTTTTCGGCTATCTACTGTACGAGAGCCTGCCTCAGTGCAGGATGCTTCATCAAATTCCAACATTAGAAGTGGTGGGCACAAGTTTTCAACCCCTTCTAAATGTCCAAATGACAACCGTTGTTCCTCAGTTTCGCATCATGATAGGCAGTATCAAGATTCTGCCTTCATTTCTCAGACATTAAGAAAAGATGATGTGATGCCCAGGCTAGGAACTTCGCTCATTCAGAACGGTGAAGATATGTCTTTGCCACCTGCACATTCTTCCCATTTAGAAATACATTCTGCAACATTCATTTCTCATCCTCAGGAAAGTGATGATAATTCCTGGGGACCAGATCCCTTTCAGGATATTCTTAATTTCCCCGAAAGTGATTCCGTCCAGAATGATCAGGAGGAAAATAGCACTTGTTATATATCTTATGACAACACCAAAAAAACTGATTTTGGGGAGTGGGTCGAGCAGTTAATGTCAGTTGATGATTCTCCGCATCCAAATTGGAGTCACCTTCTTGGTGATGATAATCTAGCAGATTCAAAATCAAAGGAGACCCACGCAACCAAGCAGCAGCATGCACAAGCTGGAGAAGTTAATGCCCTTCCTAGTCCTACTCCAGCGTCGAATGCACTACAAACTAAACCAAGAATGCGTTGGACTCCAGAACTTCACGAAGCTTTTGTGGAAGCAGTGAATAAGCTTGGTGGTAACGAGAAGGCTACTCCAAAGGGCGTCTTGAACCTAATGAAAGTTGAGGGTCTTACCATCTATCATGTGAAAAGCCATCTACAGAAGTATAGAACAGCCAGATACAAACCCGAGTCATCTGGAGGACCTTCTGAGAAAAAGTCAACATCAACCAAAGAAACGAAATCTTTCGACTTGAAAGCAATGGGGATTACTGAAGCATTGCGATTGCAGATGGATCTCCAGAAGCGGCTTCATGAACAACTTGAGACTCAAAGAAAGTTGCAAATTGAAATTGAAAACCAATGGAAGTGTTTTCAGATGATGTTTGAGAAACAAGGGGAGATGGAGGACAGCAAACTCAAGACATCATCGTCCCCTCCTATTGACAATTTAGGAACCTTAAATGAGGGTCAAGACAAATCTGGGATCAGCAGTATCATTGCAACAACCACGGGGGAAGAACGTTGTGAGGATGCCAGCACCAAGCAAAAGGAGGAAGAAACAAAAGTTACTGATGAAGAGGAGGTGGTGGATGATCAGTCAGGTGCACCGGCCACCAAACGGTTGAAGAGTGGATGA 1590 0.4321 MFLLLPSIIASFSLNRSQQLAVDVIPITRLKTNNNIPELQRSIFSVFQGNFPTITRVNYKRSLLTFSLLFILTSGQTKLSHLGDFRVMSSSFPFLPTHMEDKYMKPVDSFRLSTVREPASVQDASSNSNIRSGGHKFSTPSKCPNDNRCSSVSHHDRQYQDSAFISQTLRKDDVMPRLGTSLIQNGEDMSLPPAHSSHLEIHSATFISHPQESDDNSWGPDPFQDILNFPESDSVQNDQEENSTCYISYDNTKKTDFGEWVEQLMSVDDSPHPNWSHLLGDDNLADSKSKETHATKQQHAQAGEVNALPSPTPASNALQTKPRMRWTPELHEAFVEAVNKLGGNEKATPKGVLNLMKVEGLTIYHVKSHLQKYRTARYKPESSGGPSEKKSTSTKETKSFDLKAMGITEALRLQMDLQKRLHEQLETQRKLQIEIENQWKCFQMMFEKQGEMEDSKLKTSSSPPIDNLGTLNEGQDKSGISSIIATTTGEERCEDASTKQKEEETKVTDEEEVVDDQSGAPATKRLKSG 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3931 529 Pfam MYB-CC type transfactor, LHEQLE motif 405 451 IPR025756 -
Dere01g3931 529 FunFam Myb family transcription factor 320 378 - -
Dere01g3931 529 Gene3D - 320 379 - -
Dere01g3931 529 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 318 378 IPR017930 -
Dere01g3931 529 MobiDBLite consensus disorder prediction 454 529 - -
Dere01g3931 529 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 305 508 IPR044848 GO:0003700
Dere01g3931 529 MobiDBLite consensus disorder prediction 271 318 - -
Dere01g3931 529 MobiDBLite consensus disorder prediction 298 318 - -
Dere01g3931 529 NCBIfam myb-like DNA-binding domain, SHAQKYF class 321 375 IPR006447 GO:0003677
Dere01g3931 529 SUPERFAMILY Homeodomain-like 319 375 IPR009057 -
Dere01g3931 529 MobiDBLite consensus disorder prediction 375 398 - -
Dere01g3931 529 MobiDBLite consensus disorder prediction 118 148 - -
Dere01g3931 529 MobiDBLite consensus disorder prediction 492 507 - -
Dere01g3931 529 MobiDBLite consensus disorder prediction 118 155 - -
Dere01g3931 529 MobiDBLite consensus disorder prediction 456 488 - -
Dere01g3931 529 Pfam Myb-like DNA-binding domain 323 374 IPR001005 -
Dere01g3931 529 Coils Coil 408 428 - -
Dere01g3931 529 MobiDBLite consensus disorder prediction 283 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3931 Dere-ChrDere01 53112578 53117464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3931 199 462 G2-like Transcription Factor Family AT3G04450 46.595 1.33e-70 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Dere01g3931 Myb_DNA-binding 6.2e-09 CL0123