Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3927 ATGCGGCAATGAGCACAACGGGAAAATGGCTTTAAGAAGAAGATGAAATTGCATGCTCTCGGAAGAATCCTAGTGGTTAGTGTTAACATAGTGGATGAAGGTTGCAGGCCATGTGGGCACAAGAATCTGCACAAAGGAGAAAAGGGTACGACGAGATTTGGCTGTGGTTGCGAGAATAATAATGAGAAGCTAAGGTTTCATGTGATGCTGGAGAGTCCAAGAATGCAGGAGTTTGCGAGGGATTATCAGGAAGAAAAGGAGGAAGATAAGAACTTAGAAATGGCGTGTTACGAAGAGGATGAAGAAGATGATGTAGCTAGTTGTTCTACAATGGAGGGAAAGACAGAGGAAGTGGAAGATATCGGGAGTGCTTCTAGTGGTTCATTCATTGACGATTCAGATGATGGGTCTGCATGTTCTGATTTAGATGACAGAGTACATCTTGAGGAACCTTTAACTGAGAAAGAAATAGAAGATCTGATCGCTGAGTTGTTAGAAGTAGAGAGTAAGGCTGCAGAGGCCCAAGAAGCTCTTGAAGAGGAGTCTCTTGCCAAAGTGGAGATTGAGGTTAGGCAAGAGTTGGAGCAAACTCTTCAAGAGGGTGATTTGGAAACTGCTGTTGCAGATGAGATGAATATTTTAAGAGAAGAGTGGGAAGCTGTTCTGGATGATCTTGAGACTGAAAGTGCCTATCTGCTGGAACAACTTGATATGGCTGGCATTGAGCTCCCAAGGCTTTATAAGGGGATTGAAAGAGAAGCTCCTAATGGTTGTTGCACTGAAGCTTGGAAAAAGAGGAATCATTGGGTGGGGTCTCAGGCAACCGATGAATTTGCTGAGTCAGTTGCTGATGCTGAGAAGTATCTACAAGTCCACAGACCTGTTAGAAGGCGGCATGGTAAACTATTGGAAGAGGGTGCCAGTGGATTTCTCCAAAAAAAACTTATAGATGAAACCAGTGAGCCTGTAAAGGAAGAAACTGAGGTAGATTGGGAACTGTTTAACAAAATGTTTCATGACGGGGGTGATGCTAATGCTTCATTTGGCAGCAAGAATTGGGCTTCTGTTTATTTGGCCAGCACTCCACAGCAAGCTGCACTGATGGGACTCGAATTTCCTGGTGTCAATGAGGTGGAGGAGATTGATGACGTCGATGGCAATTCTGCTGATCCATTTATTGCTGCTGCAATTGCAAATGAAAAGGAATTAGAACTTTCTGATGAACAAAATAGAAAATTTAGAAAGGTCAAAGAAGAAGATGATGCAATTGTTGATCGGAAGCTTCAAATCCATTTGAAAAGGAGGAGGTACCAAAAGAATAAAAAACAGAAGTCTTCATCTTCATCTGGCGAAAATGTGTCTGATAATGAATTTGGATGTCTGAATATGAAGAATAATAATATTGAAGGTCTTGGTAGCAGTTATGATGTTGACAAAGAGAAGCCTATGAACATTGGCCCTTTGTCAGAGATCTCTAAATCTTCATTGCCTGATGTTGAACACAGAGGTACCAAGCGACTAAATGATGATGAATTAGATACTGATATTAAGAAGCATCGGACTGTTACTGTTGACACTGATGTTGAAGCTGAAGCTGATGCAGTTGAAAATAAGATAGTTTTGAATGCATGTACACTAGAGGATCAATCCAAGATAAAAGATGGTACTCATACTAGCATTGCTGAGCATCTGGATGAGAAATTTTGCTGCACTGCTTGTGATAAAGTGGCTCTTGAAGTTCACCCACACCCTCTTTTGAAAGTGATTATTTGTGGGGATTGCAATTCCCTAATGGAAGAAAAGTTACATGTGAAGGATTTAAATCCTGATTGTTCTGAGTGTTACTGTGCATGGTGCGGAGGAAGTAGTGAGTTAGTCAGGTGTAAATCATGCAAAATGTTATTCTGCAACAACTGTATAAAGAAGAATCTTGGTGCAGAATTCCTTTCTGAAGTCCAGGCGAATGGTTGGCATTGTTGTTGCTGCCACCCAAATCTCTTGCAAAGACTGTCATTGCAACTAGAGAAGGCTATGGAATGTACCGATACATCATTTTCCAGCTCTAGTAGTGATTCGGATAATTCACATGCAGAGATTAATGTTACAATCAGTTCTAAGCGAAAGCCCAAAAAGAAGATCCGGAGGATCCTTGATGATGCTGAATTAGGAGAGGAAACCAAAAGGAAAATTGCGATTGAAAAGGAGCGTCAGGAACGATTGGAGTCTTTGCGAGAACAGTTTTCTGCCTCATCTAACGTCATGAGATCTTCTGGATGTAATGGGAATTTATCTGAAGGTGCAAGTATTGAAGTCCTTGGTGATGCGCTCACAGGTTATGTAGTGAATGTGGTGAGGGAAAAAGGTGAAGAAGCAGTCAGAATTCCTCCTAGTATCTCAGCTAAACTTAAAGCTCATCAGATTGCGGGGATAAGATTTATGTGGGAGAATATAATTCAGTCAATCAGAAAAGTGAAGTCTGGTGATAAAGGTCTTGGTTGTATTCTGGCTCATACAATGGGCCTTGGTAAAACCTTTCAGGTGATAGCTTTCTTGTACACAGCAATGAGAAGTATTGATCTGGGGTTAAGAACTGCACTTATAGTCACACCTGTTAATGTGCTGCACAATTGGCGGCAGGAATTCATCAAATGGCGACCATCAGAAGTAAAGCCACTCAGAGTTTTCATGCTGGAAGATGTATCAAGGCACAGGAGAGCAGAATTGCTTGCAAAATGGAGAGCTAAAGGTGGCATCTTTCTGATTGGATATTCTGCTTTTCGAAATTTGTCTTTTGGAAAGCATGTGAAAGATCGGCACATGGCTCGAGAAATTTGTCATGCTTTGCAGGACGGGCCAGACATACTTGTTTGTGATGAAGCCCACATGATAAAGAATATAAAGGCTGACACAACCCAAGCCTTGAAACAAGTAAAATGCCATAGAAGAATTGCACTAACTGGATCTCCTCTTCAGAACAATCTCATGGAGTATTATTGTATGGTTGATTTTGTAAGAGAAGGTTTTCTTGGAAGCAGCCATGAATTTAGGAACCGCTTCCAAAATCCTATAGAGAATGGTCAACATACTAATTCAACGCTGGATGATGTGAAGATTATGAACCAAAGGTCTCATATCCTGTATGAACAGTTAAAAGGCTTCGTTCAAAGAATGGACATGAATGTGGTGAAGAAGGATTTGCCACCAAAAACTGTCTTTGTGATAACTGTTAAGCTTTCCCCCCTACAGAGAAAACTGTATAAGAGATTCCTTGATGTGCATGGATTTACCAAGGACCAGGCTTCTAATGAAAGAATGAGAAAGAGAAGTTTTTTTGCCGGGTACCAAGCATTAGCTCAGATATGGAACCACCCTGGGATCTTGCAATTGAGAAAAGAAGACAATCACTATGTAAGACAAGAAGATGCAGTGGAGAATTTTCTGGTGGACGACAGCTCTAGTGACGAAAACTCTGATTATAATGTGCTTGTTGGAGAGAAGACGAGATGTGCAAATGAGTTTCTGCAAGGGAAAGGCGAGAATGGCTTTTTTCTAAAGGGTTGGTGGAATGATCTTCTACATGAAAAAAATTATAAAGAACTTGATTACAGTGGCAAAATGGTTTTGCTCCTAGACATACTAACCATGAGTTCTGATATGGGTGACAAGGTGTTGGTTTTTAGCCAGAGCATACCAACACTAGACCTGATAGAACTTTATCTATCAAGGTTACCTCGTCAAGGCAAACATGGGAAATTCTGGAAGAAGAGAAAAGATTGGTATAGGCTGGATGGAAGAACAGAGAGCTCTGAAAGGCAGAAGCTTGTTGAGAGGTTTAATGAGCCTCTCAATAAGAGAGTCAAGTGCGCTCTTATTTCAACCAGAGCTGGCTCTTTGGGTATAAATCTCCATGCAGCTAATCGTGTTGTAATAGTTGATGGTTCTTGGAATCCAACATATGATCTTCAGGCTATCTATCGAGCTTGGAGGTATGGCCAGAGAAAGCCTGTGTTTGCTTACCGATTACTGGCTCACGGAACAATGGAAGAGAAAATATACAAGCGCCAGGTAACAAAGGAGGGGCTGGCTGCTAGAGTGGTTGATAGACAGCAAGTGTATAGGACAATATCTAAAGAAGAGATGTTACATCTCTTTGAGTTCGGTGATGATGAAAACCCTGAGACATTGGCTGAACTGAGCCAAGAGAATAGGCATTCACTGAAACAGACATTACCACATTCAAATGGGACTAGTTATTCTGATAAGTTAATGGAAAGTTTACTCGGCAAGCACTATCCAAAGTGGATTGCCAATTATCACGAACACGAAACCCTGTTGCAAGAGAATGAAGAAGAAAAGCTATCAAAAGAGGAGCAAGACATGGCCTGGGAAGTATACCGGAAAACGTTAGAATGGGAGGAAGTGCAAAGAGTTCCCCTTGGTGAGTCCCTGCATGATCAAAAACCACGAGTGCCGAATGCAGGACCCCCTGTATCAGAGACCCTTAGCCTCTCACCAACTAAGTTGAGGAATCGTTTTGTGACACGGAAATGCACCAACCTTGTGCACTTGCTGACGCTTAGAAGTCAGGGCACTAAATTTGGTTGCACTACAGTCTGTGGGGAATGCGCCCAAGAGATCAGGTGGGAAGACTTGAAGAACAGAGATGGCAGAGCTGCAAGGTGA 4683 0.4179 MRQXAQRENGFKKKMKLHALGRILVVSVNIVDEGCRPCGHKNLHKGEKGTTRFGCGCENNNEKLRFHVMLESPRMQEFARDYQEEKEEDKNLEMACYEEDEEDDVASCSTMEGKTEEVEDIGSASSGSFIDDSDDGSACSDLDDRVHLEEPLTEKEIEDLIAELLEVESKAAEAQEALEEESLAKVEIEVRQELEQTLQEGDLETAVADEMNILREEWEAVLDDLETESAYLLEQLDMAGIELPRLYKGIEREAPNGCCTEAWKKRNHWVGSQATDEFAESVADAEKYLQVHRPVRRRHGKLLEEGASGFLQKKLIDETSEPVKEETEVDWELFNKMFHDGGDANASFGSKNWASVYLASTPQQAALMGLEFPGVNEVEEIDDVDGNSADPFIAAAIANEKELELSDEQNRKFRKVKEEDDAIVDRKLQIHLKRRRYQKNKKQKSSSSSGENVSDNEFGCLNMKNNNIEGLGSSYDVDKEKPMNIGPLSEISKSSLPDVEHRGTKRLNDDELDTDIKKHRTVTVDTDVEAEADAVENKIVLNACTLEDQSKIKDGTHTSIAEHLDEKFCCTACDKVALEVHPHPLLKVIICGDCNSLMEEKLHVKDLNPDCSECYCAWCGGSSELVRCKSCKMLFCNNCIKKNLGAEFLSEVQANGWHCCCCHPNLLQRLSLQLEKAMECTDTSFSSSSSDSDNSHAEINVTISSKRKPKKKIRRILDDAELGEETKRKIAIEKERQERLESLREQFSASSNVMRSSGCNGNLSEGASIEVLGDALTGYVVNVVREKGEEAVRIPPSISAKLKAHQIAGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSIDLGLRTALIVTPVNVLHNWRQEFIKWRPSEVKPLRVFMLEDVSRHRRAELLAKWRAKGGIFLIGYSAFRNLSFGKHVKDRHMAREICHALQDGPDILVCDEAHMIKNIKADTTQALKQVKCHRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRKLYKRFLDVHGFTKDQASNERMRKRSFFAGYQALAQIWNHPGILQLRKEDNHYVRQEDAVENFLVDDSSSDENSDYNVLVGEKTRCANEFLQGKGENGFFLKGWWNDLLHEKNYKELDYSGKMVLLLDILTMSSDMGDKVLVFSQSIPTLDLIELYLSRLPRQGKHGKFWKKRKDWYRLDGRTESSERQKLVERFNEPLNKRVKCALISTRAGSLGINLHAANRVVIVDGSWNPTYDLQAIYRAWRYGQRKPVFAYRLLAHGTMEEKIYKRQVTKEGLAARVVDRQQVYRTISKEEMLHLFEFGDDENPETLAELSQENRHSLKQTLPHSNGTSYSDKLMESLLGKHYPKWIANYHEHETLLQENEEEKLSKEEQDMAWEVYRKTLEWEEVQRVPLGESLHDQKPRVPNAGPPVSETLSLSPTKLRNRFVTRKCTNLVHLLTLRSQGTKFGCTTVCGECAQEIRWEDLKNRDGRAAR 1560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3927 1560 Gene3D - 1067 1417 IPR027417 -
Dere01g3927 1560 Coils Coil 157 191 - -
Dere01g3927 1560 CDD SF2_C_SNF 1199 1342 - -
Dere01g3927 1560 Coils Coil 75 95 - -
Dere01g3927 1560 MobiDBLite consensus disorder prediction 434 495 - -
Dere01g3927 1560 SMART ultradead3 798 1019 IPR014001 -
Dere01g3927 1560 Coils Coil 1438 1458 - -
Dere01g3927 1560 MobiDBLite consensus disorder prediction 1483 1502 - -
Dere01g3927 1560 Pfam SNF2-related domain 824 1126 IPR000330 GO:0005524|GO:0140658
Dere01g3927 1560 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 824 1007 IPR014001 -
Dere01g3927 1560 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1062 1404 IPR027417 -
Dere01g3927 1560 PANTHER RAD54-LIKE 141 1553 IPR044574 GO:0016887
Dere01g3927 1560 Pfam Helicase conserved C-terminal domain 1207 1331 IPR001650 -
Dere01g3927 1560 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 788 1056 IPR027417 -
Dere01g3927 1560 ProSiteProfiles ADD domain profile. 558 690 IPR025766 -
Dere01g3927 1560 SMART helicmild6 1234 1331 IPR001650 -
Dere01g3927 1560 MobiDBLite consensus disorder prediction 443 472 - -
Dere01g3927 1560 CDD ADDz_ATRX 566 664 - -
Dere01g3927 1560 Coils Coil 208 235 - -
Dere01g3927 1560 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1208 1379 IPR001650 -
Dere01g3927 1560 Gene3D - 776 1056 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3927 Dere-ChrDere01 53069293 53099980 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3927 812 1361 RAD5 or RAD16-like Gene Family AT1G02670 25.614 8.70e-24 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Dere01g3927 SNF2_N 4.7e-52 CL0023