Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3925 ATGCAGAGCCAATTGCTGTTCTTCTACTGTTACATTGGCCTCTCTCTTGTTTTTGCTGAGGGAGTTCAAGCTGCACCCGGTGATGATTTGTCAGCTCTTCTTTCAATCAAATCCAGTCTCGTTGATCCAATGAAACACCTGAAGGATTGGCATGCACCACCCAATCTGACCCACAATGGTTCGTGGTCACCCCATTGTAAGTGGACTGGAGTTTGGTGCAACACTAAAGGTTTCGTTGAGAGACTCGACCTCTCCAACATGAACCTTAGTGGTCGTGTTTCAGACCACATTCAAGCACTTTCAAGTTTGTCTTATTTTAACATTAGTTATAACAATTTAGCTTCGTCATTGCCAAAATCACTGTCCAATCTCACCTCCTTGAAGAGCTTTGATGTAAGCCAGAACTACTTCACAGGCAGCTTTCCTACGGATCTTGGAAGAGCTACAGGATTGAGATCAGTTAACGCGTCAAATAATGACTTTTTGGGCTTTCTTCCTGAGGACCTTGGAAATGCAACATTACTCGAAAGCCTCGATTTTCGAGGGAGCTACTTCAAAGGTTCAATCCCAAGGAGTTTCAAGAATTTACAGAAGCTCACATTCCTGGGGCTTTCAGGGAATAACTTTACGGGGAAGATTCCAGGAGAACTTGGAGAAGTCACATCTCTAGAGACACTAATTCTTGGGTACAATGAGTTTGAAGGTGAGATCCCTTCAGAGTTTGGCAACCTCACCAATCTTCAGTACCTAGACTTGGCTGTGGGTAGTCTCAGTGGACAGATTCCACCAGAATTGGGTAAGTTGAAAAAACTTACTACGATTTTCTTGTACAAGAACATGTTCGAAGGAAAGATTCCCCCTGAGATTGGCAACATTACGTCACTGGAATTTCTGGACCTGTCTGATAATAAGATTTCAGGGGAGATTCCAGAGCAAATTGCTGAGCTGAAGAACTTGCAGTTACTGAATGTAATGAGCAACAAACTAACTGGTTTTGTGCCAGAAAAGCTTGGTGAGTTGAAGAATTTAAAGGTGCTAGAGCTGTGGAAAAATTCTTTACAAGGTCCTTTGCCAGTGAACCTTGGACAGAACTCTCCATTGCAGTGGATAGACGTGTCTTCGAACTCATTATCAGGTATGATTCCTCCAGGTTTGTGTGCTTCTGGAAATCTCACCAAACTGATTCTTTTCAATAATTCCTTCTCTGGTTCCATTCCAAGTGGGATTTCGAATTGTGTGTCTTTGGCACGTGTTCGCATTCATAACAACCTTATATCTGGGACTATTCCAGTTGGTTTTGGAAACCTCCCAAGTCTTCAAAGGCTGGAATTGGCTAAGAACAATCTCACTGGCCAAATTCCAATAGATATTACTTCGTCCGCCTCACTTTCTTTCATTGATGTATCTTGGAACCACCTAGAATCATCTCTACCTTCTGGAATTCTCTCTATCCCGACCCTTCAAACCTTCATTGCCTCCAACAACAAGTTGGGAGGCAATATACCAGATGAGTTCCAGGACTGTTTGTCTCTCTCTGCGCTGGATCTTTCAGAAAACCTTATATCTGGAAAAATCCCAGAGAGCATTTCCTCTTGCCAAAAACTAGTCAAGCTGAACCTTGGAAACAACCACTTAACCGGGGAAATCCCGAAATCAATCACAAACATGCCCACCTTAGCCATTCTTGATCTGTCCAGCAATTCACTTTCTGGTCGGATACCTGAAAACCTGGGCAGCTCCCCGGCTCTTGAAACGCTCAACCTGTCGTACAACAAGCTTGAGGGTCCAGTGCCCTCAAATGGGATTCTGATTACCATAAATCTTAATGATATCATTGGCAATCCTGGTCTCTGCGGAGGCATTCTTCCTCCATGTTCTCAGACTTTTACTCCGACAAGCCAGCGAAGGAGCTCACACACGAAGCACATCATAATTGGTTTTATCACTGGCATGTCAGTGATTTTATCTCTTGGCATAGCGTATTTCGGTGGTAGATGGTTATATAACAAATGGTACTTGTACAACAGTTTCATCCATGACTGGTTCAAAAGCAGCAACGAAGAATGGCCTTGGAGACTAGTGGCATTCCAAAGGGTCAGTTTCACTAGCTGTGACATCCTCGCTTGCATAAAGGAATCAAATATCTTAGGCATGGGAGGCACTGGTATTGTCTACAAAGCTGAAATTCATAGACCTCATGTAACAGTAGCAGTGAAGAAACTTTGGAGACCAGGAACAGACATAGAAAATGGCAACGATGTGTTGAGAGAAGTGAACCTGCTAGGGAGACTGAGGCATAGGAATATTGTAAGGCTTCTGGGGTATGTTCACAATGAAAGGGACGTGATGATGGTGTACGAGTATATGCCCAATGGGAACCTTGGGACAGCACTGCATGGCGAGCAAGGTGAGAGGTTACTGGTAGACTGGGTTTCGAGGTATAACATAGCTGTTGGAGTTGCACAAGGCCTCAATTACCTCCACCATGATTGTCACCCACCAGTTATTCACAGGGATATCAAGTCTAACAACATACTCCTTGACGCAAATTTGGAGGCAAGGATAGCAGATTTCGGGTTAGCAAAAATGATGATCCATAAAAATGAGACAGTTTCAATGGTGGCTGGATCTTATGGATATATCGCACCAGAATATGGATATACTCTGAAGGTGGACGAGAAAATTGACATATACAGTTATGGAGTAGTACTGCTGGAGCTGCTTACTGGGAAAAAGCCATTAGACCCGTCATTTGAAGAATGTGTGGACATAGTTGAATGGGTGCGAAAGAAGAGGAGCAAGGGAGGCTTGGAAGAAGCACTAGACCCCACTATAGCGGGTAGGTGCAAGCATGTCCAAGAAGAGATGCTTCTTGTGCTCCGTATTGCACTTCTCTGTACAGTAAAGCTTCCAAAGGAAAGACCATCCATGAGGGACATCGTGACTATGCTTGGAGAAGCAAAACCCAGAAGGAAAAGCATTTGTCGCAATGGAGTAATCGACGGAAGCAAGGAAAAGCCAATCTTCACCACCTCCCCCATAGTAAACCTTCTCTAG 3057 0.4393 MQSQLLFFYCYIGLSLVFAEGVQAAPGDDLSALLSIKSSLVDPMKHLKDWHAPPNLTHNGSWSPHCKWTGVWCNTKGFVERLDLSNMNLSGRVSDHIQALSSLSYFNISYNNLASSLPKSLSNLTSLKSFDVSQNYFTGSFPTDLGRATGLRSVNASNNDFLGFLPEDLGNATLLESLDFRGSYFKGSIPRSFKNLQKLTFLGLSGNNFTGKIPGELGEVTSLETLILGYNEFEGEIPSEFGNLTNLQYLDLAVGSLSGQIPPELGKLKKLTTIFLYKNMFEGKIPPEIGNITSLEFLDLSDNKISGEIPEQIAELKNLQLLNVMSNKLTGFVPEKLGELKNLKVLELWKNSLQGPLPVNLGQNSPLQWIDVSSNSLSGMIPPGLCASGNLTKLILFNNSFSGSIPSGISNCVSLARVRIHNNLISGTIPVGFGNLPSLQRLELAKNNLTGQIPIDITSSASLSFIDVSWNHLESSLPSGILSIPTLQTFIASNNKLGGNIPDEFQDCLSLSALDLSENLISGKIPESISSCQKLVKLNLGNNHLTGEIPKSITNMPTLAILDLSSNSLSGRIPENLGSSPALETLNLSYNKLEGPVPSNGILITINLNDIIGNPGLCGGILPPCSQTFTPTSQRRSSHTKHIIIGFITGMSVILSLGIAYFGGRWLYNKWYLYNSFIHDWFKSSNEEWPWRLVAFQRVSFTSCDILACIKESNILGMGGTGIVYKAEIHRPHVTVAVKKLWRPGTDIENGNDVLREVNLLGRLRHRNIVRLLGYVHNERDVMMVYEYMPNGNLGTALHGEQGERLLVDWVSRYNIAVGVAQGLNYLHHDCHPPVIHRDIKSNNILLDANLEARIADFGLAKMMIHKNETVSMVAGSYGYIAPEYGYTLKVDEKIDIYSYGVVLLELLTGKKPLDPSFEECVDIVEWVRKKRSKGGLEEALDPTIAGRCKHVQEEMLLVLRIALLCTVKLPKERPSMRDIVTMLGEAKPRRKSICRNGVIDGSKEKPIFTTSPIVNLL 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3925 1018 SUPERFAMILY RNI-like 257 608 - -
Dere01g3925 1018 FunFam MDIS1-interacting receptor like kinase 1 710 792 - -
Dere01g3925 1018 FunFam Leucine-rich repeat receptor protein kinase EMS1 285 368 - -
Dere01g3925 1018 SUPERFAMILY Protein kinase-like (PK-like) 704 984 IPR011009 -
Dere01g3925 1018 Pfam Leucine rich repeat N-terminal domain 27 74 IPR013210 -
Dere01g3925 1018 FunFam MDIS1-interacting receptor like kinase 1 793 1001 - -
Dere01g3925 1018 ProSitePatterns Protein kinases ATP-binding region signature. 716 740 IPR017441 GO:0005524
Dere01g3925 1018 ProSiteProfiles Protein kinase domain profile. 710 991 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g3925 1018 ProSitePatterns Serine/Threonine protein kinases active-site signature. 835 847 IPR008271 GO:0004672|GO:0006468
Dere01g3925 1018 Pfam Leucine Rich repeat 293 308 IPR001611 GO:0005515
Dere01g3925 1018 SUPERFAMILY L domain-like 65 356 - -
Dere01g3925 1018 ProSiteProfiles Leucine-rich repeat profile. 294 317 IPR001611 GO:0005515
Dere01g3925 1018 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 184 284 - -
Dere01g3925 1018 SMART serkin_6 710 984 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g3925 1018 SMART LRR_typ_2 292 316 IPR003591 -
Dere01g3925 1018 SMART LRR_typ_2 436 460 IPR003591 -
Dere01g3925 1018 SMART LRR_typ_2 340 364 IPR003591 -
Dere01g3925 1018 SMART LRR_typ_2 100 124 IPR003591 -
Dere01g3925 1018 SMART LRR_typ_2 556 580 IPR003591 -
Dere01g3925 1018 SMART LRR_typ_2 220 243 IPR003591 -
Dere01g3925 1018 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 26 183 - -
Dere01g3925 1018 Gene3D Phosphorylase Kinase; domain 1 710 792 - -
Dere01g3925 1018 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 175 979 - -
Dere01g3925 1018 Gene3D Ribonuclease Inhibitor 269 335 IPR032675 -
Dere01g3925 1018 Gene3D Ribonuclease Inhibitor 216 268 IPR032675 -
Dere01g3925 1018 Gene3D Ribonuclease Inhibitor 150 215 IPR032675 -
Dere01g3925 1018 Gene3D Ribonuclease Inhibitor 28 149 IPR032675 -
Dere01g3925 1018 Pfam Protein kinase domain 712 917 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g3925 1018 Pfam Leucine rich repeat 534 593 IPR001611 GO:0005515
Dere01g3925 1018 Pfam Leucine rich repeat 414 473 IPR001611 GO:0005515
Dere01g3925 1018 Gene3D Ribonuclease Inhibitor 336 631 IPR032675 -
Dere01g3925 1018 Gene3D Transferase(Phosphotransferase) domain 1 793 1000 - -
Dere01g3925 1018 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 369 629 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3925 Dere-ChrDere01 53032328 53036109 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3925 4 1018 Receptor kinase-like Gene Family AT1G08590 63.566 0.0 1281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Dere01g3925 Pkinase 3.3e-47 CL0016