Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere01g3920 | ATGATTTCGCATCTCCATCTGCAGGGGACTCCAGTGAATATCATTGTAGGTTCCCATGTCTGGATTGAAGATCCAGAGGTAGCTTGGATTGATGGACAGGTATCAAAAATCAATGGAAAGGATGCTGAAATTGAAACTACCAATGGAAAAAAGGTTACTGCAAAATTATCAAAAATATATCCCAAAGATACGGAAGCTCCTGCTGGTGGAGTGGATGATATGACAAAGCTGTCTTATTTGCACGAGCCTGGAGTCCTGCAGAACCTAAAATCTAGATATGAGTTGAATGAAATATATACTTATACTGGAAATATTCTGATTGCCATAAATCCATTCCAAAGGCTACCTCATATTTATGATCCTCACATGATGCAACAATACAAGGGAGCACCATTTGGAGAACTAAGTCCTCATGTATTTGCAGTTGCTGATGTTGCATTTAGGGCAATGATTAACGAAGGAAAAAGCAACTCAATTCTTGTCAGTGGGGAAAGTGGGGCTGGTAAAACTGAAACTACAAAAATGCTTATGCGATACCTAGCTTTCTTAGGTGGTAGGGCTGCTACTGAAGGACGAACAGTTGAACAACAAGTTCTTGAATCAAATCCAGTTCTTGAAGCATTTGGCAATGCAAAAACTGTTAGGAATAACAATTCCAGCCGTTTTGGTAAATTTGTTGAGATACAATTTGATAAGAGTGGAAGAATCTCAGGAGCAGCTATCCGAACTTACCTTCTGGAGAGATCTCGGGTTTGCCAAGTTAATGATCCTGAACGTAACTATCACTGCTTTTATCTGCTTTGTGCTGCACCGCAGGAGGAAATTGAGAAATACAAATTAGATCACCCTAGATCATTTCACTATCTTAACCAGTCAAATTGCTTCGAGCTGGCTGATGTAAGTGATGCTCGTGAGTATCTTGCCACCCGGAGAGCTATGGATGTTGTTGGAATAAGCCAAAAAGAGCAGGAAGCAATTTTCCGAGTTGTTGCTGCAATTCTTCATATTGGTAATATTGCTTTTGCCAAAGGGAAGGAAGTTGACTCATCAATTCCAAAAGATGACAAAGCCAAATTCCACTTGAAAACTACCGCAGAGCTTCTCATGTGTGATGCTGGTGCCTTGGAAGATGCATTGTGCAAGCGTGTCATGATCACCCCTGAAGAAGTTATAAAACGGAGTCTCGACCCCCGAAGTGCGGCAATAAGTAGAGATGGCTTGGCAAAAACAATTTATTCTCGGCTATTTGACTGGTTGGTGGACAAGATTAATAATTCAATCGGACAAGATCCCAATTCCAAATGTTTGATTGGGGTCCTTGATATCTATGGTTTTGAAAGCTTCAAAACTAACAGTTTTGAGCAGTTCTGCATTAATTTCACAAATGAGAAGTTGCAGCAACATTTCAATCAGCACGTGTTTAAAATGGAACAAGAAGAATATACAAAGGAGCAGATTAATTGGAGCTACATTGAATTTGTTGATAATCAAGATGTTTTAGATCTTATTGAAAAGAAACCTGGAGGAATTATTGCTCTCCTTGATGAAGCCTGCATGTTTCCCAAGTCAACACATGAAACATTTGCAAACAAGCTTTATCAAACATTTAAGAATCACAAGCGTTTTGTAAAGCCAAAATTGTCTCGAACAGATTTCACCATTGCTCATTATGCTGGGGAGGTCTTATACCAGTCTGACCAGTTTTTAGACAAAAATAAAGATTATGTGGTTGCTGAACATCAAGATTTGTTGAGTGCTTCCAAATGTCCTTTTGTAGCAGGCCTTTTTCCTCCTCTTCCAGAAGAGACATCAAAATCTTCCAAGTTTTCTTCAATAGCATCTCGTTTTAAGCTGCAACTACAGCAACTAATGGATACATTAAACTCAACAGAGCCTCATTATGTCAGATGTGTGAAACCGAACAACCTCCTTAAGCCTGCAATATTTGAGAATGTCAACATTATGCAACAACTTCGCTGTGGCGGTGTGTTAGAGGCAATCAGAATTAGTTGTGCTGGTTACCCTACTCGCCGTCTTTTCTTTGAATTTTCAAACCGATTTGGAATCCTTGCCCCAGAGGTCATGGAAGGAAACTATGATGAAAAGGTTGCTTGCCAAAAGATTCTGGAAAAAGTGGGTCTTAAAGGATATCAGATTGGGAAAACAAAGATATTCCTGAGGGCAGGTCAGATGGCTGAACTAGATGCACAAAGAGCTCAAGTACTGAGTAGTGCAGCCAAAACTATCCAACGGCGCATACGAACCCATCAAGCTCGTAATCATTATCTTGCATTGCGCAAGACTACTGTATTCATGCAGTCTTTATGTAGAGGAAGACTCGCATGCAAACTTTATGAGAACATAAGAAGGGAGGCTGCTGCAAAGAAAATTCAGAAGAACATGCGCAGATATGCAGCTAGGAAAGCCTATAAAAGACTCCATGCTTCAGTACTTATCTTGCAAACAGGTTTAAGGACAATGGCTGCTCGTAATCAGTTCAGATTTAGGAAGCGGACTCAAGCTGCAATCATAATCCAGGCTTGGTGGCGATGCCGGAAGGCTACCTCATATTATATGAGGCTCAAGAAAGGTACAATAGTTACACAATGCAGATGGAGGGGGCGTTTGGCCAGGAGAGAACTTAGGAAACTCAAAATGGCTGCAAGAGAAACTGGTGCACTTAAAGAAGCAAAGGATAAGCTTGAAAAGCGAGTGGAGGAACTCACTTGGCGTCTACAATTAGAAAAGAGTTTAAGGACTAATCTAGAAGAAGCCAGAGCACAAGAAGTAGCAAAACTACAGAACTCAATACAGGAGATGCAGAGCAAACTTGATGAAACCAATGCTTTACTGATCAAGGAGCGGGAGAATGTAAAAAAAGTCGTAGAAGAAGCACCACCTGTAATTAAAGAAACCCAGGTTCTAGTTGAAGACACACAAAAAATTGAGTCACTAACAGGGGAAGTTGAGAGCCTGAAGACTTCATTAGAGTCAGAGAAACAGAAAGCTGATGACTTCGAAAGAAAATACAATGAATCTCAAGCTTTTAGTGAAGAACAGGGTAAAAAATTAGAAGACACAGAGAAGAAGGTTCGTCAGCTCCAAGAATCGTTAACCAGGCTGGAAGAGAAAATTAATAATTTAGAATCAGAAAATCGGGTTCTACGTCAGCAAGCTGTGTCCATGACACCAAATAAGTTCCTTTCAGGACGCTCCAGATCTATTATACAGAGAGGTGCTGAAAGTGGTCATATAGGAGGAGAAACAAAGATACCTTTGGATCTGCATAGCCCATCAATTAACCAGAGGGAACACTCTGAAGTAGAGGATAAACCACAAAAGTCACTAAATGAGAAACAGCAGGAGAATCAAGAGTTGCTCATTAGATGTATTGCACAACATCTGGGCTTTTCAGGGAACAGACCTATTGCTGCATGTATCATATACAAATGCCTCTTACATTGGAGATCATTTGAAGTAGAGCGCACTAGTGTTTTTGATCGTATTATTCAAACTATCGGCAATGCAATTGAGACACAGGATAACAATGATGTCTTGGCTTATTGGTTATCCAATGCCTCTACACTTTTATTGTTACTCCAGCGCACACTTAAGGCAAGTGGTGCTGCTGGAATGGCCCCACAACGCCGTCGCTCTTCATCAGCAACTCTATTTGGGAGAATGACACAAAGTTTTCGTGGAACTCCAGCAGGAGTTAATCTCTCCTTGATCAATGGTCACATGAGTGGTGGTGTAGATACATTGCGACAAGTTGAAGCCAAATATCCAGCTTTGCTTTTCAAACAGCAGCTTACTGCATATGTAGAAAAAATATATGGAATGATTCGAGATAATTTGAAGAAAGAAATTTCTCCCTTGCTAGGGTTGTGCATCCAGGCACCAAGAACATCCAGAGCAAGCTTGGTTAAGGGATCACGGTCTGTTGCAAACACTGAAGCTCAGCGAGCTTTGATTGCTCACTGGCAGGGGATAGTTAAGAGCCTTGGGAACTTTTTGAATACTTTGAAAGCAAATCATGTTCCCCCATTTTTAGTTCGTAAGGTGTTCACTCAAATTTTTTCTTTCATCAATGTCCAACTATTCAATAGTCTACTTTTAAGACGAGAGTGCTGCTCATTTAGTAACGGAGAATATGTCAAAGCTGGTTTGGCTGAACTGGAGCATTGGTGTTATAAGGCGACAGATGAGTATGCAGGTTCAGCCTGGGATGAGCTCAAACATATCAGACAGGCTATTGGATTCCTGGTCATACATCAGAAACCTAAGAAAACATTGGACGAAATAAGCCATGATCTGTGCCCGGTCCTCAGTATACAGCAGCTATATCGGATTAGCACCATGTACTGGGATGACAAGTATGGCACACATAGCGTGTCCCCGGATGTCATATCCAACATGAGGGTGTTGATGACTGAAGATTCGAATAACGCTGTCAGTAATTCTTTCCTGTTGGATGATGATTCAAGCATTCCGTTTTCTGTTGATGACCTGTCAAAGTCAATGGAACAAATAGATATCTCCGATGTTGAGTCCCCACCCCTTATTCGTGAAAACTCTGGCTTTAGTTTCTTGTTGCCACGCCCAGATTGA | 4611 | 0.4092 | MISHLHLQGTPVNIIVGSHVWIEDPEVAWIDGQVSKINGKDAEIETTNGKKVTAKLSKIYPKDTEAPAGGVDDMTKLSYLHEPGVLQNLKSRYELNEIYTYTGNILIAINPFQRLPHIYDPHMMQQYKGAPFGELSPHVFAVADVAFRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRAATEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKSGRISGAAIRTYLLERSRVCQVNDPERNYHCFYLLCAAPQEEIEKYKLDHPRSFHYLNQSNCFELADVSDAREYLATRRAMDVVGISQKEQEAIFRVVAAILHIGNIAFAKGKEVDSSIPKDDKAKFHLKTTAELLMCDAGALEDALCKRVMITPEEVIKRSLDPRSAAISRDGLAKTIYSRLFDWLVDKINNSIGQDPNSKCLIGVLDIYGFESFKTNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEQINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFANKLYQTFKNHKRFVKPKLSRTDFTIAHYAGEVLYQSDQFLDKNKDYVVAEHQDLLSASKCPFVAGLFPPLPEETSKSSKFSSIASRFKLQLQQLMDTLNSTEPHYVRCVKPNNLLKPAIFENVNIMQQLRCGGVLEAIRISCAGYPTRRLFFEFSNRFGILAPEVMEGNYDEKVACQKILEKVGLKGYQIGKTKIFLRAGQMAELDAQRAQVLSSAAKTIQRRIRTHQARNHYLALRKTTVFMQSLCRGRLACKLYENIRREAAAKKIQKNMRRYAARKAYKRLHASVLILQTGLRTMAARNQFRFRKRTQAAIIIQAWWRCRKATSYYMRLKKGTIVTQCRWRGRLARRELRKLKMAARETGALKEAKDKLEKRVEELTWRLQLEKSLRTNLEEARAQEVAKLQNSIQEMQSKLDETNALLIKERENVKKVVEEAPPVIKETQVLVEDTQKIESLTGEVESLKTSLESEKQKADDFERKYNESQAFSEEQGKKLEDTEKKVRQLQESLTRLEEKINNLESENRVLRQQAVSMTPNKFLSGRSRSIIQRGAESGHIGGETKIPLDLHSPSINQREHSEVEDKPQKSLNEKQQENQELLIRCIAQHLGFSGNRPIAACIIYKCLLHWRSFEVERTSVFDRIIQTIGNAIETQDNNDVLAYWLSNASTLLLLLQRTLKASGAAGMAPQRRRSSSATLFGRMTQSFRGTPAGVNLSLINGHMSGGVDTLRQVEAKYPALLFKQQLTAYVEKIYGMIRDNLKKEISPLLGLCIQAPRTSRASLVKGSRSVANTEAQRALIAHWQGIVKSLGNFLNTLKANHVPPFLVRKVFTQIFSFINVQLFNSLLLRRECCSFSNGEYVKAGLAELEHWCYKATDEYAGSAWDELKHIRQAIGFLVIHQKPKKTLDEISHDLCPVLSIQQLYRISTMYWDDKYGTHSVSPDVISNMRVLMTEDSNNAVSNSFLLDDDSSIPFSVDDLSKSMEQIDISDVESPPLIRENSGFSFLLPRPD | 1536 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere01g3920 | 1536 | ProSiteProfiles | IQ motif profile. | 765 | 794 | IPR000048 | GO:0005515 | |
| Dere01g3920 | 1536 | Coils | Coil | 884 | 918 | - | - | |
| Dere01g3920 | 1536 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 319 | 608 | - | - | |
| Dere01g3920 | 1536 | Pfam | Myosin head (motor domain) | 71 | 727 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Dere01g3920 | 1536 | ProSiteProfiles | IQ motif profile. | 742 | 769 | IPR000048 | GO:0005515 | |
| Dere01g3920 | 1536 | FunFam | Myosin heavy chain | 259 | 314 | - | - | |
| Dere01g3920 | 1536 | FunFam | unconventional myosin-Va | 793 | 840 | - | - | |
| Dere01g3920 | 1536 | Coils | Coil | 930 | 957 | - | - | |
| Dere01g3920 | 1536 | SMART | iq_5 | 860 | 882 | IPR000048 | GO:0005515 | |
| Dere01g3920 | 1536 | SMART | iq_5 | 837 | 859 | IPR000048 | GO:0005515 | |
| Dere01g3920 | 1536 | SMART | iq_5 | 741 | 763 | IPR000048 | GO:0005515 | |
| Dere01g3920 | 1536 | SMART | iq_5 | 789 | 811 | IPR000048 | GO:0005515 | |
| Dere01g3920 | 1536 | SMART | iq_5 | 764 | 786 | IPR000048 | GO:0005515 | |
| Dere01g3920 | 1536 | SMART | iq_5 | 812 | 834 | IPR000048 | GO:0005515 | |
| Dere01g3920 | 1536 | FunFam | Myosin 2 | 319 | 432 | - | - | |
| Dere01g3920 | 1536 | CDD | MYSc_Myo11 | 83 | 727 | IPR036018 | - | |
| Dere01g3920 | 1536 | FunFam | unconventional myosin-Va | 744 | 792 | - | - | |
| Dere01g3920 | 1536 | ProSiteProfiles | Myosin motor domain profile. | 69 | 739 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Dere01g3920 | 1536 | CDD | MyosinXI_CBD | 1118 | 1502 | IPR037975 | GO:0007015 | |
| Dere01g3920 | 1536 | PRINTS | Myosin heavy chain signature | 203 | 230 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Dere01g3920 | 1536 | PRINTS | Myosin heavy chain signature | 99 | 118 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Dere01g3920 | 1536 | PRINTS | Myosin heavy chain signature | 156 | 181 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Dere01g3920 | 1536 | PRINTS | Myosin heavy chain signature | 436 | 464 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Dere01g3920 | 1536 | PRINTS | Myosin heavy chain signature | 489 | 517 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Dere01g3920 | 1536 | Pfam | DIL domain | 1355 | 1458 | IPR002710 | - | |
| Dere01g3920 | 1536 | Gene3D | - | 741 | 791 | - | - | |
| Dere01g3920 | 1536 | Gene3D | - | 792 | 839 | - | - | |
| Dere01g3920 | 1536 | Gene3D | - | 840 | 889 | - | - | |
| Dere01g3920 | 1536 | PANTHER | MYOSIN | 61 | 1467 | - | - | |
| Dere01g3920 | 1536 | ProSiteProfiles | IQ motif profile. | 790 | 817 | IPR000048 | GO:0005515 | |
| Dere01g3920 | 1536 | FunFam | Class V myosin | 446 | 587 | - | - | |
| Dere01g3920 | 1536 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 15 | 64 | IPR004009 | GO:0003774|GO:0005524|GO:0016459 | |
| Dere01g3920 | 1536 | SMART | MYSc_2a | 63 | 740 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Dere01g3920 | 1536 | ProSiteProfiles | IQ motif profile. | 861 | 890 | IPR000048 | GO:0005515 | |
| Dere01g3920 | 1536 | FunFam | unconventional myosin-Va | 841 | 888 | - | - | |
| Dere01g3920 | 1536 | Pfam | Myosin N-terminal SH3-like domain | 16 | 58 | IPR004009 | GO:0003774|GO:0005524|GO:0016459 | |
| Dere01g3920 | 1536 | Gene3D | - | 446 | 630 | - | - | |
| Dere01g3920 | 1536 | Coils | Coil | 982 | 1009 | - | - | |
| Dere01g3920 | 1536 | Gene3D | - | 259 | 317 | - | - | |
| Dere01g3920 | 1536 | Coils | Coil | 1017 | 1058 | - | - | |
| Dere01g3920 | 1536 | Pfam | IQ calmodulin-binding motif | 863 | 882 | IPR000048 | GO:0005515 | |
| Dere01g3920 | 1536 | Pfam | IQ calmodulin-binding motif | 839 | 858 | IPR000048 | GO:0005515 | |
| Dere01g3920 | 1536 | Pfam | IQ calmodulin-binding motif | 792 | 811 | IPR000048 | GO:0005515 | |
| Dere01g3920 | 1536 | Pfam | IQ calmodulin-binding motif | 744 | 762 | IPR000048 | GO:0005515 | |
| Dere01g3920 | 1536 | Gene3D | Kinesin motor domain | 72 | 669 | IPR036961 | - | |
| Dere01g3920 | 1536 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 791 | 890 | IPR027417 | - | |
| Dere01g3920 | 1536 | SMART | DIL_2 | 1354 | 1461 | IPR002710 | - | |
| Dere01g3920 | 1536 | ProSiteProfiles | Dilute domain profile. | 1167 | 1479 | IPR002710 | - | |
| Dere01g3920 | 1536 | Gene3D | - | 674 | 740 | - | - | |
| Dere01g3920 | 1536 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 43 | 792 | IPR027417 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere01g3920 | Dere-ChrDere01 | 52999306 | 53010872 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere01g3920 | 9 | 1536 | Myosins gene family | AT1G54560 | 84.173 | 0.0 | 2722 |