Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3911 ATGGCGGCTTCGACGCAGCCCAAGCCCAAGAAATCAGCGGTGACGAAGAAGTCGAAATCCTCGCCCTCGCATCCGCCCTTCGCTGAGATGATTACTGACGCGATCTTAAGTCTCAAGGAGAGGACTGGTTCGAGCCAGTATGCCATTGCCAAGTTTATCGAGGAGAAGCACAAGCTTTTGCCTCCCAATTTCAGAAAGCTTTTGCTGTATTATTTGAAGAAGTCGGTGGCTGCTGGAAAGCTCGTCAAGGTTAAAAACTCCTTCAAGCTTTCAGCGACTCGATCGGCTCCTACTAAGAAGCCCGTGGACGGTAAAGCTGCAAAAGCAACTGCCAAGACTGCATCCAAGCCTCAGCCTAAGACCTCTGCGAAGTCGAAAGAGGCAGCAAAGCCGAAAGCCGCCTCCAAGCCTAAAACTACTGCCGCTGCAAGCACTAAAGCAGCCGCAAAGCCGGCTAAGACAACAGTAACAAGCTCGCTGGGGAAGAGGATTTTGAAAGCGGCAAAGAGTGTGAAGAAGCCTAAGAGCGTGAAATCCCCGGTGAAAAAAGGGGCTGTGAAGAAGGCTAAGAAGTAA 576 0.5104 MAASTQPKPKKSAVTKKSKSSPSHPPFAEMITDAILSLKERTGSSQYAIAKFIEEKHKLLPPNFRKLLLYYLKKSVAAGKLVKVKNSFKLSATRSAPTKKPVDGKAAKATAKTASKPQPKTSAKSKEAAKPKAASKPKTTAAASTKAAAKPAKTTVTSSLGKRILKAAKSVKKPKSVKSPVKKGAVKKAKK 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3911 191 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 23 92 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dere01g3911 191 MobiDBLite consensus disorder prediction 166 191 - -
Dere01g3911 191 Pfam linker histone H1 and H5 family 24 90 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dere01g3911 191 SMART h15plus2 21 87 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dere01g3911 191 PANTHER HISTONE H1 5 190 - -
Dere01g3911 191 CDD H15 21 100 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dere01g3911 191 Gene3D - 18 103 IPR036388 -
Dere01g3911 191 MobiDBLite consensus disorder prediction 1 27 - -
Dere01g3911 191 PRINTS Histone H5 signature 37 54 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Dere01g3911 191 PRINTS Histone H5 signature 120 134 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Dere01g3911 191 PRINTS Histone H5 signature 10 31 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Dere01g3911 191 PRINTS Histone H5 signature 169 188 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Dere01g3911 191 MobiDBLite consensus disorder prediction 90 191 - -
Dere01g3911 191 SUPERFAMILY "Winged helix" DNA-binding domain 20 101 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3911 Dere-ChrDere01 52945618 52946279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3911 23 122 Single Myb Histone (SMH) Gene Family AT1G49950 31.858 4.37e-08 50.1