Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3906 ATGGCGAGCCAGGTGGTCAAAGTAAAGAGGGAGACGCTAGAAGCATGCATGACATGCCCTCTTTGTCATAAGTTGTTGAAGGATGCTACTACCATCTCTCTCTGCCTTCATACGTTTTGCAGGAAGTGCATATATGAGAAACTGTCAGATGAGGAGGCAGATTGCTGTCCAGTATGCAATATTGATCTAGGTTGTCTTCCAGTGGAAAAACTGAGGCCAGATCACAATTTGCAAGATATAAGGGCAAAAGTTTTCCCTTTTAAAAGACGAAAGATTAAGGCCCCAGAGGTTGTACCTTCAGTGTCACTGCCAGCAAAAAGGAAGGAAAGATCGCTTTCATCATTGGTGATTACTGCTCCTAAAGTTCCAATGCAGACTGGCTTCACAGGAAAGAGAACGAAAACTGGTACTAGAAAGGCCGCTGCTTTACGCGGATGCAATTTTACCATTGAAGAACCCATAAAGAAGGAAGAAACATATGCTGAAGATAATCCAGATTCTTCCACTGCTGAGCCTTCTAAGAAGAATAGGCCTAATGAAGATACAGAGAATAATGTGGAACTTACAGAATGGAAGGTTGATCTCTGGACACCCTTGAACTGTCTTGTTGAAGCCGCCAACAGAACAAAGTCCTCCAAGTTAATTTCACAAGGGTTGTCTCTTGCCAAATCAGAGCCTCCAACTACTCCTAACAGTGGACTGAATATGCCTGAAATTACAACAAAATCAGAGCCACCTGCTACTGTCCATAGTGAGTTACGTATGCCTAAAACCAAAATCAAGGATAATGGTCATAAATCAAAATTTGGAGATGACAAGGATGGGACTGGCATGCCTCCAGGACAAGTGAGGCGTAGAAGGGTGCGTCCAGCTGGTCAGAAAAGAGCAACAGCATCAGAAGTTATGCTGGATGCAGCTGGGGGCAGGGGTAACAGAGAAAACAGTCCTATTTGGTTTTCATTAGTTGCTTCAGAAGACCAGGATGGTACTGTGCCTGTCTCGTTTATTCAAAAGTACCTTGTGAAGAAACTTGATCTTGCCAGCGAAGCAGAGGTGGAAATAATGTGCCGTGGTCGACCAGTGCTGCCATCACTGCAACTGCATAACTTAGTAGATCTGTGGTTCAGGACAGCTTCAACCTCTAAAAAGATTCCTGCATCTGTGGGCTCCTCCGCTAAGGACTTCGTTATGGTTTTATCATATTGTCGAAAGGCCTTAGCTCCCTGA 1227 0.4434 MASQVVKVKRETLEACMTCPLCHKLLKDATTISLCLHTFCRKCIYEKLSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKVFPFKRRKIKAPEVVPSVSLPAKRKERSLSSLVITAPKVPMQTGFTGKRTKTGTRKAAALRGCNFTIEEPIKKEETYAEDNPDSSTAEPSKKNRPNEDTENNVELTEWKVDLWTPLNCLVEAANRTKSSKLISQGLSLAKSEPPTTPNSGLNMPEITTKSEPPATVHSELRMPKTKIKDNGHKSKFGDDKDGTGMPPGQVRRRRVRPAGQKRATASEVMLDAAGGRGNRENSPIWFSLVASEDQDGTVPVSFIQKYLVKKLDLASEAEVEIMCRGRPVLPSLQLHNLVDLWFRTASTSKKIPASVGSSAKDFVMVLSYCRKALAP 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3906 408 SMART ring_2 19 59 IPR001841 -
Dere01g3906 408 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 1 405 IPR044807 GO:0004842
Dere01g3906 408 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
Dere01g3906 408 MobiDBLite consensus disorder prediction 154 186 - -
Dere01g3906 408 MobiDBLite consensus disorder prediction 254 273 - -
Dere01g3906 408 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Dere01g3906 408 MobiDBLite consensus disorder prediction 219 247 - -
Dere01g3906 408 SUPERFAMILY RING/U-box 12 83 - -
Dere01g3906 408 CDD RING-HC_PCGF 17 60 - -
Dere01g3906 408 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 111 IPR013083 -
Dere01g3906 408 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
Dere01g3906 408 MobiDBLite consensus disorder prediction 219 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3906 Dere-ChrDere01 52916854 52921898 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3906 5 337 C3H Transcription Factor Family AT2G30580 43.132 2.16e-81 251