Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3902 ATGACGAGCGTGAATGAGGCAGAGCGAGACAAGTACAACATGATCAACTTTGAAGAAACGGAGTTGCGACTGGGGTTGCCTGGTGCTTCTGCAGCTGCGAATGACGCTGAATCTGCACTCAAGAACACTTGGTCTACTGGTGGCAAGAGAGGCTTCTCCGACGCTTCTGTGGATTTGAAGCTCAATCTCTCTTCCAATACTAACAAGTTAGCCGACGAACCCACACACAACACAACTGCTGCTGCTACTGCTGCTCCCCATAACGACCCTGCAAAGCCACCCGCTAAGGCACAAGTTGTGGGTTGGCCACCCGTTCGATCATCCAGAAAGAACATCGTCACCGTCCAAAAGACTAACAAGGATGAAGCCGGAACCGCCGGCAGCGGCGGCGCAACGTTCGTGAAGGTGAGCATGGACGGTGCACCCTATCTGCGCAAAGTGGACTTGAAGATGTACAAGAGCTACCAGGAACTGTCGGATGCACTAGCTAAAATGTTCAGCTCCTTCACCGTCGGTAATTACGGATCTCAGGGCATGAAGGACTTCATGAATGAGAGCAAACTCATAGATCTTTTGAACGGATCTGACTATGTCCCAACTTATGAAGACAAGGACGGAGACTGGATGCTTGTGGGTGACGTCCCCTGGGAAATGTTCGTGGAATCATGCAAGCGCCTTCGCATAATGAAAGGATCTGAGGCAATCGGGCTAGCACCAAGGGCAGTGGAAAAATGCAAAAACAGAAGCTGA 750 0.5093 MTSVNEAERDKYNMINFEETELRLGLPGASAAANDAESALKNTWSTGGKRGFSDASVDLKLNLSSNTNKLADEPTHNTTAAATAAPHNDPAKPPAKAQVVGWPPVRSSRKNIVTVQKTNKDEAGTAGSGGATFVKVSMDGAPYLRKVDLKMYKSYQELSDALAKMFSSFTVGNYGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAVEKCKNRS 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3902 249 SUPERFAMILY CAD & PB1 domains 127 230 - -
Dere01g3902 249 Gene3D - 127 243 - -
Dere01g3902 249 FunFam Auxin-responsive protein 126 241 - -
Dere01g3902 249 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 16 236 IPR003311 GO:0005634|GO:0006355
Dere01g3902 249 MobiDBLite consensus disorder prediction 82 103 - -
Dere01g3902 249 ProSiteProfiles PB1 domain profile. 131 231 IPR000270 GO:0005515
Dere01g3902 249 Pfam AUX/IAA family 19 240 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3902 Dere-ChrDere01 52875777 52877739 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3902 120 239 B3 DNA Binding Superfamily AT4G23980 30.833 1.56e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Dere01g3902 AUX_IAA 2.6e-85 CL0072