Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere01g3900 | ATGGCCGAGGAAGCCAAGGCCAAAGGTAATGCAGCCTTCTCTTCTGGTGATTTTGACGCTGCCATACGTCACTTTTCCGACGCCATCTCTCTATCCCCCAATAACCATGTCCTCTACTCCAATCGCTCAGCCGCCTACGCCTCCCTTCACAAATACTCTGAAGCTTTAACCGACGCCAAGAAGACCGTCGAGCTCAAGCCCGATTGGTCTAAGGGCTACAGTCGTCTCGGCGCCGCTCATCGTGGACTCGGCCAACACGATGATGCTATCGCTGCTTACAAGAAGGGCCTTGAGATCGACCCCAATAATGAACCACTTAAATCTGGCTTGGCTGATGCCCGGGCGGCGGCTTCCAGGTCCCGTTCGGCGCCTTCCATGGGTAATCCTTTTGGAGACGCTTTCTCTGGACCCGAGATGTGGGCCAGGCTCACTGCTGATCCCACGACTAGAGCATATCTACAGCAACCTGATTTCGTAAAGATGATGCAGGATATTCAGAAAAATCCCAACAATCTGAACTTGTATATGAAAGATCAAAGAGTCATGCAGGCCCTTGGGGTTTTGCTCAACGTCAAGATTCGCACTCCAAATGAGGATACCGATATGCCCGAGTCTTCGTCTTCGCCTCCGCCACCAGAGAGGAAGAGAGCTGCTGAAGCTGAACCTGCGAAGGAAGAGAAGCGGCCTGAGCGTGAGCCTGAGCCAATGGAATTGACGGAGGAGGGGAAGGAAGCGAGGGATAGGAAGGCTCAGGCTCAGAGGGAAAAGGAGGCAGGTAATGCGGCTTACAAAAAGAAGGATTTTGAAACAGCAATTCAACACTACTCTAAGGCTATGGAGTTGGATGATGAGGATATATCATATCTCACGAACCGCGCTGCTGTTTACCTGGAAATGGGAAAGTTTGAAGACTGTATAAAAGATTGTGACAAGGCTGTTGAAAGGGGAAGGGAATTAAGATCAGACTTCAAGATGATAGCAAGAGCTTTGACAAGGAAGGGAACTGCCCTAGTCAAAATGGCAAAATGCTCAAAGGACTATGAACCTGCCATCGAGACTTTTCAAAAGGCACTTACAGAGCATCGCAACCCTGACACCTTGAAGAAATTGAACGAGGCTGAAAAGGCCAAGAAAGAACTTGAACAGCAAGAATACTTTGATCCAAAATTGGCTGATGAGGAGCGTGAAAAAGGTAATGAATTCTTCAAGCAGCAAAATTATCCCGAGGCTGTAAAGCATTACACAGAGTCTCTGAGAAGGAACCCTAATGACCCTAGGACATACAGTAACAGAGCTGCAAGCTACACAAAACTTGGGGCCATGCCTGAGGGTTTGAAGGATGCAGACAAATGCATCGAGCTTGATCCAACATTCACGAAGGGTTACACTAGAAAAGGTGCTATACAGTTTTTCATGAAGGAATATGACAAAGCTTTGGAAACATATCAGGAGGGGTTGAAACATGACCCTAACAACCAAGAGTTGCTTGATGGCATAAGAAGATGCGTAGAACAAATCAATAAGGCCAGCCGTGGGGATATAAGTCCTGAGGAGTTGAAGGAGAGACAGGCCAAGGCAATGCAGGACCCAGAGATACAGAACATACTCCAAGACCCTGTTATGAGACAGGTATTGGTTGATTTCCAGGAAAATCCCAAGGCTGCCCAGGAGCATACAAAGAATCCAATGGTGATGAACAAGATCCAGAAGCTCGTCAGTGCTGGGATTGTCCAGATTAGATAA | 1743 | 0.4791 | MAEEAKAKGNAAFSSGDFDAAIRHFSDAISLSPNNHVLYSNRSAAYASLHKYSEALTDAKKTVELKPDWSKGYSRLGAAHRGLGQHDDAIAAYKKGLEIDPNNEPLKSGLADARAAASRSRSAPSMGNPFGDAFSGPEMWARLTADPTTRAYLQQPDFVKMMQDIQKNPNNLNLYMKDQRVMQALGVLLNVKIRTPNEDTDMPESSSSPPPPERKRAAEAEPAKEEKRPEREPEPMELTEEGKEARDRKAQAQREKEAGNAAYKKKDFETAIQHYSKAMELDDEDISYLTNRAAVYLEMGKFEDCIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEYFDPKLADEEREKGNEFFKQQNYPEAVKHYTESLRRNPNDPRTYSNRAASYTKLGAMPEGLKDADKCIELDPTFTKGYTRKGAIQFFMKEYDKALETYQEGLKHDPNNQELLDGIRRCVEQINKASRGDISPEELKERQAKAMQDPEIQNILQDPVMRQVLVDFQENPKAAQEHTKNPMVMNKIQKLVSAGIVQIR | 580 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere01g3900 | 580 | SUPERFAMILY | TPR-like | 251 | 379 | IPR011990 | GO:0005515 | |
| Dere01g3900 | 580 | Pfam | STI1 domain | 137 | 190 | IPR041243 | - | |
| Dere01g3900 | 580 | Pfam | STI1 domain | 521 | 572 | IPR041243 | - | |
| Dere01g3900 | 580 | ProSiteProfiles | TPR repeat profile. | 70 | 103 | IPR019734 | GO:0005515 | |
| Dere01g3900 | 580 | ProSiteProfiles | TPR repeat profile. | 2 | 35 | IPR019734 | GO:0005515 | |
| Dere01g3900 | 580 | ProSiteProfiles | TPR repeat profile. | 252 | 285 | IPR019734 | GO:0005515 | |
| Dere01g3900 | 580 | ProSiteProfiles | TPR repeat profile. | 391 | 424 | IPR019734 | GO:0005515 | |
| Dere01g3900 | 580 | Gene3D | Tetratricopeptide repeat domain | 249 | 385 | IPR011990 | GO:0005515 | |
| Dere01g3900 | 580 | MobiDBLite | consensus disorder prediction | 214 | 261 | - | - | |
| Dere01g3900 | 580 | Pfam | Tetratricopeptide repeat | 8 | 35 | IPR019734 | GO:0005515 | |
| Dere01g3900 | 580 | SMART | CBM | 136 | 175 | IPR006636 | - | |
| Dere01g3900 | 580 | SMART | CBM | 529 | 568 | IPR006636 | - | |
| Dere01g3900 | 580 | ProSiteProfiles | TPR repeat region circular profile. | 70 | 103 | - | - | |
| Dere01g3900 | 580 | FunFam | Stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizing) | 512 | 580 | - | - | |
| Dere01g3900 | 580 | Gene3D | Tetratricopeptide repeat domain | 1 | 115 | IPR011990 | GO:0005515 | |
| Dere01g3900 | 580 | Gene3D | Tetratricopeptide repeat domain | 389 | 504 | IPR011990 | GO:0005515 | |
| Dere01g3900 | 580 | ProSiteProfiles | TPR repeat profile. | 459 | 492 | IPR019734 | GO:0005515 | |
| Dere01g3900 | 580 | FunFam | Stress-induced phosphoprotein 1 | 1 | 116 | - | - | |
| Dere01g3900 | 580 | SUPERFAMILY | TPR-like | 1 | 113 | IPR011990 | GO:0005515 | |
| Dere01g3900 | 580 | Coils | Coil | 363 | 383 | - | - | |
| Dere01g3900 | 580 | Gene3D | - | 127 | 193 | - | - | |
| Dere01g3900 | 580 | Pfam | TPR repeat | 259 | 300 | - | - | |
| Dere01g3900 | 580 | Pfam | TPR repeat | 398 | 439 | - | - | |
| Dere01g3900 | 580 | Gene3D | - | 510 | 580 | - | - | |
| Dere01g3900 | 580 | PANTHER | TPR REPEAT CONTAINING PROTEIN | 2 | 552 | - | - | |
| Dere01g3900 | 580 | ProSiteProfiles | TPR repeat profile. | 36 | 69 | IPR019734 | GO:0005515 | |
| Dere01g3900 | 580 | FunFam | Stress-induced phosphoprotein 1 | 249 | 383 | - | - | |
| Dere01g3900 | 580 | SUPERFAMILY | TPR-like | 390 | 503 | IPR011990 | GO:0005515 | |
| Dere01g3900 | 580 | FunFam | Putative stress-induced-phosphoprotein 1 | 126 | 194 | - | - | |
| Dere01g3900 | 580 | FunFam | hsp70-Hsp90 organizing protein 3-like | 390 | 504 | - | - | |
| Dere01g3900 | 580 | SMART | tpr_5 | 391 | 424 | IPR019734 | GO:0005515 | |
| Dere01g3900 | 580 | SMART | tpr_5 | 425 | 458 | IPR019734 | GO:0005515 | |
| Dere01g3900 | 580 | SMART | tpr_5 | 252 | 285 | IPR019734 | GO:0005515 | |
| Dere01g3900 | 580 | SMART | tpr_5 | 2 | 35 | IPR019734 | GO:0005515 | |
| Dere01g3900 | 580 | SMART | tpr_5 | 286 | 319 | IPR019734 | GO:0005515 | |
| Dere01g3900 | 580 | SMART | tpr_5 | 459 | 492 | IPR019734 | GO:0005515 | |
| Dere01g3900 | 580 | SMART | tpr_5 | 70 | 103 | IPR019734 | GO:0005515 | |
| Dere01g3900 | 580 | SMART | tpr_5 | 36 | 69 | IPR019734 | GO:0005515 | |
| Dere01g3900 | 580 | SMART | tpr_5 | 327 | 364 | IPR019734 | GO:0005515 | |
| Dere01g3900 | 580 | MobiDBLite | consensus disorder prediction | 194 | 261 | - | - | |
| Dere01g3900 | 580 | Pfam | Tetratricopeptide repeat | 71 | 103 | IPR001440 | GO:0005515 | |
| Dere01g3900 | 580 | Pfam | Tetratricopeptide repeat | 460 | 492 | IPR001440 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere01g3900 | Dere-ChrDere01 | 52845586 | 52848253 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere01g3900 | 390 | 486 | U-box Gene Family | AT3G07370 | 27.835 | 3.82e-06 | 47.0 |