Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3899 ATGAAACTTCCCGAATTGAACACAGATTGCTTGGGTGACGCTCGCCTCGCTCCTCGTTATCTCTTACACTACCGAAAGAGAGGCAGAAGGAGCGCGCCAACACAATCAACAACACACGCTCTATTTGTGGAAAATATGGCGACGCAGTCTTTGAGAGTGACCACGGCTTCGGCTTCGTCTCTCTGCAATTTCAATGGGTCTCGTAGGAAGCCAACCCTTCGCTCTCCAATTCGCTTCACGGGGGTTCGCCCTCGACCCTCTCATTCTCTTACTTCATCTTCCCTTTCACAATTCTATGGAACTGCGCGAATTAGCTCCAAATTTTCAAAGCTATCCGGTTTACGCCGACAGAGCAGTAGAAACTTTTCTGTTTTCGCAATGGCGGCTGAAGATCCTAGTCGAGCCATTCCATTGAAAGATTACCGCAATATTGGAATCATGGCTCACATAGACGCTGGAAAGACAACTACAACAGAACGAATTCTCTACTATACAGGAAGAAACTACAAAATAGGAGAAGTACATGAAGGAACAGCAACAATGGATTGGATGGAACAAGAGCAAGAAAGAGGGATTACCATAACTTCGGCTGCAACAACTACATTTTGGAATAAGCACCGGATCAACATAATTGATACTCCTGGTCATGTTGACTTCACCCTAGAAGTGGAGCGGGCTCTTAGGGTGTTGGATGGAGCTATATGTTTATTTGATAGTGTTGCCGGTGTGGAACCACAATCAGAAACCGTATGGAGACAAGCTGATAAATATGGGGTCCCACGAATTTGTTTTGTCAATAAGATGGACCGTCTTGGAGCAAATTTTTTCCGGACAAGAGATATGATAGTAACAAATTTGGGTGCTAAACCACTTGTAATTCAGTTACCAATTGGTTCAGAAGATAACTTTAAGGGAGTTGTTGATCTCGTGAGAATGAAAGCTATAATTTGGTCTGGGGAAGAGTTGGGTGCCAAGTTTACTTATGAAGATATTCCAGCAGATCTTGAAGAGCTGGCTCAGGATTATCGATCCCAGATGATAGAAACTGTAGTTGAGATGGATGATCAAGCTATGGAAAGCTACCTAGAAGGAATTGAACCAGATGAAGAAACCATCAAGAAATTGATTAGGCAGGGAACAATATCTGGAAAATTTGTGCCAGTACTGTGTGGTTCAGCTTTCAAAAACAAGGGGGTCCAACCATTGCTTGATGCTGTTGTGGATTATCTACCTTCACCATTTGACTTGCCACCAATGAAGGGAACTGACCCAGAAAACCCAGAACTGACAGTAGAGAGGACAGCAAGTGATGATGAACCATTTTCTGGACTAGCCTTCAAGATCATGAGCGATCCTTTTGTAGGTACCCTTACGTTTGTCAGGGTGTATGCTGGTAAGCTAAGCGCAGGATCTTATGTACTCAATGCAAACAAAGGGAAAAAGGAGAGAATTGGTAGACTTCTGGAAATGCATGCGAACAGCAGGGAGGATGTTAAAGTAGCTTTAACAGGTGATATAATTGCTCTTGCAGGTTTAAAAGATACTATTACAGGTGAAACATTGTGCGACCCTGATAATCCTATTGTGCTTGAGCGAATGGACTTTCCTGATCCTGTGATAAAGGTTGCAATTGAACCAAAAACTAAAGCTGATATTGACAAGATGGCAACTGGTTTAATTAAGCTTGCCCAGGAAGACCCTTCTTTCCACTTCTCCAGGGATGAAGAGATTAACCAGACAGTGATAGAAGGAATGGGAGAATTGCATCTTGAAATCATTGTTGACCGACTTAAGAGAGAATTTAAGGTGGAAGCTAATGTCGGGGCACCTCAAGTAAACTACAGGGAAAGTATTTCCAAAATCTCAGAAGTGAAGTATGTGCACAAGAAACAGTCGGGAGGACAAGGTCAATTTGCGGATATTACGGTACGGTTCGAACCCCTGGAGCCAGGTAGTGGATATGAGTTCAAGAGTGAGATCAAAGGAGGTGCTGTTCCAAAAGAATACATTCCAGGAGTGATGAAAGGATTGGAAGAGTGTATGAGCAATGGCGTGCTTGCTGGATTTCCAGTTGTTGATGTACGTGCTGCACTTGTTGATGGTTCTTACCATGATGTAGATTCAAGTGTCCTGGCATTCCAATTGGCAGCAAGAGGAGCTTTTCGGGAGGGAATGAGAAAAGCTGGACCAAAGATGCTTGAACCTGTGATGAAAGTTGAAGTTGTTACCCCTGAAGATCATTTAGGAGATGTAATTGGCGATCTCAACTCAAGAAGAGGCCAGATCAACAGCTTTGGTGACAAACCCGGTGGCCTTAAGGTGGTTGATTCCCTGGTTCCTCTTGCCGAGATGTTTCAGTATGTGAGTACCCTCAGGGGTATGACCAAGGGCCGCGCATCCTACACAATGCAGTTAGCCAAGTTTGATGTTGTACCTCAGCACATTCAAAATCAACTCGCCTCGAAGGACCAAGAAGTCCCTGCATAA 2487 0.4395 MKLPELNTDCLGDARLAPRYLLHYRKRGRRSAPTQSTTHALFVENMATQSLRVTTASASSLCNFNGSRRKPTLRSPIRFTGVRPRPSHSLTSSSLSQFYGTARISSKFSKLSGLRRQSSRNFSVFAMAAEDPSRAIPLKDYRNIGIMAHIDAGKTTTTERILYYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTFWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVIQLPIGSEDNFKGVVDLVRMKAIIWSGEELGAKFTYEDIPADLEELAQDYRSQMIETVVEMDDQAMESYLEGIEPDEETIKKLIRQGTISGKFVPVLCGSAFKNKGVQPLLDAVVDYLPSPFDLPPMKGTDPENPELTVERTASDDEPFSGLAFKIMSDPFVGTLTFVRVYAGKLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALTGDIIALAGLKDTITGETLCDPDNPIVLERMDFPDPVIKVAIEPKTKADIDKMATGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRESISKISEVKYVHKKQSGGQGQFADITVRFEPLEPGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVDVRAALVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPVMKVEVVTPEDHLGDVIGDLNSRRGQINSFGDKPGGLKVVDSLVPLAEMFQYVSTLRGMTKGRASYTMQLAKFDVVPQHIQNQLASKDQEVPA 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3899 828 PRINTS GTP-binding elongation factor signature 143 156 IPR000795 GO:0003924|GO:0005525
Dere01g3899 828 PRINTS GTP-binding elongation factor signature 209 219 IPR000795 GO:0003924|GO:0005525
Dere01g3899 828 PRINTS GTP-binding elongation factor signature 225 236 IPR000795 GO:0003924|GO:0005525
Dere01g3899 828 PRINTS GTP-binding elongation factor signature 189 197 IPR000795 GO:0003924|GO:0005525
Dere01g3899 828 PRINTS GTP-binding elongation factor signature 261 270 IPR000795 GO:0003924|GO:0005525
Dere01g3899 828 CDD EF-G 143 413 - -
Dere01g3899 828 Pfam Elongation factor G, domain IV 610 728 IPR005517 GO:0005525
Dere01g3899 828 Gene3D - 133 423 IPR027417 -
Dere01g3899 828 FunFam Elongation factor G 735 806 - -
Dere01g3899 828 Gene3D - 616 819 IPR014721 -
Dere01g3899 828 NCBIfam small GTP-binding protein domain 141 311 IPR005225 GO:0005525
Dere01g3899 828 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 137 412 IPR027417 -
Dere01g3899 828 FunFam Elongation factor G 423 538 - -
Dere01g3899 828 SUPERFAMILY Ribosomal protein S5 domain 2-like 610 730 IPR020568 -
Dere01g3899 828 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 182 197 IPR031157 -
Dere01g3899 828 SUPERFAMILY Translation proteins 395 535 IPR009000 -
Dere01g3899 828 SUPERFAMILY EF-G C-terminal domain-like 535 612 IPR035647 -
Dere01g3899 828 Gene3D - 735 806 - -
Dere01g3899 828 CDD EFG_mtEFG_II 441 523 - -
Dere01g3899 828 NCBIfam elongation factor G 133 823 IPR004540 GO:0003746|GO:0005525|GO:0006414
Dere01g3899 828 Gene3D Translation factors 424 538 - -
Dere01g3899 828 Pfam Elongation Factor G, domain III 535 608 IPR041095 -
Dere01g3899 828 SMART EFG_IV_2 611 729 IPR005517 GO:0005525
Dere01g3899 828 FunFam Elongation factor G 616 746 - -
Dere01g3899 828 SMART EFG_C_a 731 819 IPR000640 -
Dere01g3899 828 FunFam Elongation factor G 132 423 - -
Dere01g3899 828 Hamap Elongation factor G [fusA]. 137 823 IPR004540 GO:0003746|GO:0005525|GO:0006414
Dere01g3899 828 CDD EFG_mtEFG1_IV 614 729 IPR005517 GO:0005525
Dere01g3899 828 CDD EFG_mtEFG_C 734 812 IPR035649 -
Dere01g3899 828 CDD EFG_III 536 611 IPR009022 -
Dere01g3899 828 FunFam Elongation factor G 539 615 - -
Dere01g3899 828 PANTHER TRANSLATION ELONGATION FACTOR G-RELATED 117 824 - -
Dere01g3899 828 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 139 414 IPR000795 GO:0003924|GO:0005525
Dere01g3899 828 SUPERFAMILY EF-G C-terminal domain-like 734 821 IPR035647 -
Dere01g3899 828 Gene3D Elongation Factor G (Translational Gtpase), domain 3 539 615 - -
Dere01g3899 828 Hamap Elongation factor G, chloroplastic. 131 828 IPR030848 GO:0003746|GO:0006414|GO:0009507
Dere01g3899 828 Pfam Elongation factor Tu domain 2 455 522 IPR004161 GO:0005525
Dere01g3899 828 Pfam Elongation factor G C-terminus 732 818 IPR000640 -
Dere01g3899 828 Pfam Elongation factor Tu GTP binding domain 140 412 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3899 Dere-ChrDere01 52840439 52844584 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3899 140 799 Eukaryotic Initiation Factors Gene Family AT1G56070 25.275 2.98e-41 160