Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3896 ATGGCGTGCAATTCATCGGAGGGATTGGGTGACGATTTTTTGGAGCAGATCTTGGCTGTGCCACCTTCTGCCTATGGCAACAGTGAAGGGTCAGGCATGCCTCCAATGGTGTTACAGTTGGGTTCTGGCAGTAGCGGTGGTGGGTTGAGAGAATCCTTAGGAATAGGGATGGGTATGCCTTTGGGGTTGAATTTGGAGCAAGGGTTTCTCCGTCAAGATGGTAGCAGAGTACGGTACGGTGATGATGTTGTTGAGGGCAACAATGTCAATAATCACCATCTCCATCTTAATAACACCAACAATAACAGCACTACTTCATCTTCCTCTCCCACTTCTGCAATCACTGAGAGAGAGTCGGTGCATAGGACGATGGGCTTATTTTCTGGGTTTGGACCGTTGCATCTTCGGCCGACGGTGCCATCTCCATCTCCCGTTCCAACACCTCAACTCCCCCATCAGTCCTACCATAGCCAACCTCCAAATCCAGTGTCTGTTGCTGTCGTTCCACAACCACCTGGCATCCGCCCTAGAGTGCGAGCAAGAAGAGGCCAAGCCACTGATCCCCATAGTATTGCTGAACGGTTACGCCGTGAAAGAATTGCTGATAGAATGAAGGCATTGCAGGAATTAGTTCCCAGCGCCAATAAGACGGACAGAGCGGCGATGCTTGATGAAATTGTGGATTATGTGAAGTTTCTCAGACTCCAGGTCAAGGTCCTCAGCATGAGTAGGCTCGGTGGAGCTGGTGCAGTAGCTCAGCTTGTGGCTGATGTTCCTCTGTCTGCAGTGGAGGTGAGTGAGGGCATTGAAGGTGGAGGAAATCAGCAAGCCTGGGAGAAATGGTCGAATGATGGCACAGAACAAGAAGTTGCAAAACTGATGGAAGAAGATGTTGGAGCTGCTATGCAGTTTCTTCAGTCCAAGGCACTTTGCATCATGCCTATATCTCTAGCATCAGCCATTTTTAGTACGCCCCAATCGGATGCTTCTACACTCATCAAACCTGAATCTAACAGCCATTCATAG 1026 0.4951 MACNSSEGLGDDFLEQILAVPPSAYGNSEGSGMPPMVLQLGSGSSGGGLRESLGIGMGMPLGLNLEQGFLRQDGSRVRYGDDVVEGNNVNNHHLHLNNTNNNSTTSSSSPTSAITERESVHRTMGLFSGFGPLHLRPTVPSPSPVPTPQLPHQSYHSQPPNPVSVAVVPQPPGIRPRVRARRGQATDPHSIAERLRRERIADRMKALQELVPSANKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPLSAVEVSEGIEGGGNQQAWEKWSNDGTEQEVAKLMEEDVGAAMQFLQSKALCIMPISLASAIFSTPQSDASTLIKPESNSHS 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3896 341 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 184 233 IPR011598 GO:0046983
Dere01g3896 341 MobiDBLite consensus disorder prediction 137 159 - -
Dere01g3896 341 SMART finulus 190 239 IPR011598 GO:0046983
Dere01g3896 341 Gene3D - 179 241 IPR036638 GO:0046983
Dere01g3896 341 MobiDBLite consensus disorder prediction 137 155 - -
Dere01g3896 341 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 49 320 - -
Dere01g3896 341 MobiDBLite consensus disorder prediction 94 116 - -
Dere01g3896 341 FunFam Transcription factor bHLH66 181 246 - -
Dere01g3896 341 Pfam Helix-loop-helix DNA-binding domain 189 233 IPR011598 GO:0046983
Dere01g3896 341 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 182 243 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3896 Dere-ChrDere01 52806431 52811443 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3896 59 338 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 54.861 1.12e-79 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere01g3896 HLH 4.4e-08 No_clan