Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3893 ATGGATGGTACGCCTCTGAATGTAGTTGAGCCTCACACTAGAGCCACTAGACGACTTGCAGAAGTGGATAATGACAATGAATGGGATCAGATCCTAACTGGTAAACTCATCATTAACTTTGATTTCTATTGCTTAGAAGAAAAGAATTCAAATTACCAAACTGGTAGCAGAAAACATTGGATATGCAGACAACAATCCAATCGAAGGGAAGCGGGAAACATTATGGATAGAGTGTTTTCAGTGGATGAAATGTCCGATCAGTTTTGGTCACCGCCGATATCCACCGGGAAAGTTGAATCCTCTTCTAAGATGAATCGCAGTGCATCTGAGTGGGCCTTCCAACAATTCCTCCAGGAAGCTTCTGTAGCTTCCGACACTTCCCACCCTTCTTCTTCCTCCGATCCTGACAAAAATGACGACCTTATCATTGAAATCAAGGAACAGCCAAAACCCAAACAGGGCCAGACCACGCCGTCTCTCAACAAGAATGCTGCTGCCTTGTCCAATGGACCTCCTTCTAATATTCCTGTTGATTCCGAGCAGTATCAGGCTATTCTGAAGAACAAACTCAATCTCGCTTGCGCCGCCGTCGCCTTGACTCGGGGATCTTTAGCCAAGTCTCAAGATCCAGCCACTTTTCCTGATGGCGTATCACAGGCCAATAAAACTTCTCAAGTTGGATCTCCTGCTACATTAGAAGGAAGTGATCCATCTAATATACATGATAAGGATGCAAATGGACCAGTTGGAATTCCTTCCTTACCTGCCATTCAAAAGAAACTTGCAGTTGCAGCCAGGCCTGCAACCAGTGGATCGTCAGGGGAGCAGTCTGACGATGAGGAAGCTGAAGGAGAGACTGATATGACTGAAAATATGGATCATGTAGATGCCAAACGAGTAAGGAGGATGCTTTCCAATAGGGAGTCAGCCAGACGCTCGAGAAGAAGAAAGCAGGCTCATTTAACTGAGCTGGAAACACAGGTTGCTCAATTAAAAGTAGAGAATTCATCCTTGTTAAAGCGCCTTACTGATGTAAGCCAGAAGTACAATGAAGCTGCTGTTGACAACAGAGTATTAAAAGCTGATATTGAAACATTAAGAGCAAAGGTAAAGATGGCTGAAGAGACTGTCAAAAGCATTACTGGGTTAAACCCAATGTTTCATGCCATGTCTAATATATCGTCAATGAGCATGCCATCATTTGATAGAAGCCCTTCTGACACGTCAACAGATGCAGCTGTACCTGTACAAGATGACCCAAATCACCATTTCTATCAACCCATTTCTAATAATTCTTTGTCCGGGCATGACCTAGAAGTCAACAATGGACTGGGGCCTATTTCTCCCATTGAAAATGTGCAGCAGAACACCGCAGCAATGGTAACTGGAAACAAGATGGGGCGAACAGCTTCCCTGCAGCGGGTGGCTAGCTTGGAACATCTTCAGAAGCGTATCCGTGGTGCTGCAGATTCTTGTGGGCCTCCAAACAATGGAGAGCAGTAA 1503 0.4484 MDGTPLNVVEPHTRATRRLAEVDNDNEWDQILTGKLIINFDFYCLEEKNSNYQTGSRKHWICRQQSNRREAGNIMDRVFSVDEMSDQFWSPPISTGKVESSSKMNRSASEWAFQQFLQEASVASDTSHPSSSSDPDKNDDLIIEIKEQPKPKQGQTTPSLNKNAAALSNGPPSNIPVDSEQYQAILKNKLNLACAAVALTRGSLAKSQDPATFPDGVSQANKTSQVGSPATLEGSDPSNIHDKDANGPVGIPSLPAIQKKLAVAARPATSGSSGEQSDDEEAEGETDMTENMDHVDAKRVRRMLSNRESARRSRRRKQAHLTELETQVAQLKVENSSLLKRLTDVSQKYNEAAVDNRVLKADIETLRAKVKMAEETVKSITGLNPMFHAMSNISSMSMPSFDRSPSDTSTDAAVPVQDDPNHHFYQPISNNSLSGHDLEVNNGLGPISPIENVQQNTAAMVTGNKMGRTASLQRVASLEHLQKRIRGAADSCGPPNNGEQ 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3893 500 Pfam bZIP transcription factor 297 349 IPR004827 GO:0003700|GO:0006355
Dere01g3893 500 Pfam Basic leucine-zipper C terminal 365 488 IPR020983 -
Dere01g3893 500 PANTHER BASIC LEUCINE ZIPPER 63 75 488 - -
Dere01g3893 500 MobiDBLite consensus disorder prediction 212 235 - -
Dere01g3893 500 Coils Coil 349 376 - -
Dere01g3893 500 MobiDBLite consensus disorder prediction 398 440 - -
Dere01g3893 500 MobiDBLite consensus disorder prediction 261 319 - -
Dere01g3893 500 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 296 351 IPR004827 GO:0003700|GO:0006355
Dere01g3893 500 Coils Coil 307 341 - -
Dere01g3893 500 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 301 316 IPR004827 GO:0003700|GO:0006355
Dere01g3893 500 Gene3D - 297 353 - -
Dere01g3893 500 MobiDBLite consensus disorder prediction 423 438 - -
Dere01g3893 500 MobiDBLite consensus disorder prediction 206 243 - -
Dere01g3893 500 MobiDBLite consensus disorder prediction 150 175 - -
Dere01g3893 500 FunFam BZIP transcription factor 296 347 - -
Dere01g3893 500 MobiDBLite consensus disorder prediction 398 415 - -
Dere01g3893 500 MobiDBLite consensus disorder prediction 288 307 - -
Dere01g3893 500 SMART brlzneu 294 358 IPR004827 GO:0003700|GO:0006355
Dere01g3893 500 SUPERFAMILY Leucine zipper domain 298 348 IPR046347 GO:0003700|GO:0006355
Dere01g3893 500 MobiDBLite consensus disorder prediction 148 175 - -
Dere01g3893 500 CDD bZIP_plant_GBF1 299 350 IPR045314 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3893 Dere-ChrDere01 52783320 52788479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3893 75 387 bZIP Transcription Factor Family AT4G02640 40.299 1.28e-49 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Dere01g3893 bZIP_C 5.2e-46 No_clan