Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3878 ATGGGGAAGGCGAGCAAGTGGATTAGAAACTTTCTGATAGGGAAAAAGGAAGAGAAATACAAGCAGATTGATGGAGCAGGCCAAAGGAGTAGTATTGATGTAGAAAGCCCCAAACTGAAGCTCAAATGGAGCTTCGGAAGAAAAACAGGGAAGGTAGCAGAACATAAAATTTCCACATCTTTTGATTTACCGGACTCTGCTAAGCTACAAATACGAGCCATCCTGCAGAATCAACCCCCCAAAACTCTTCCCATGCCATTTTCTGACCTTGAAGACGCTGCTGCTACTAAGATTCAAGCTGCTTTTCGCTCGTTTTTGGGAAGAAAAGCATTGCATGCTTTGAGGGGACTAGTCAAGTTACAGGCATTAGTGAGAGGTCACCTTGTAAGGAAACAAACAACTGCCACGCTGCGCAGCATGCATGCCTTGATGACCATTCAAGTAAGAGCCCGAATCCACAGAATTCAGATGGCACAAGAATCAAACCTTCTTGAGAAACGGCCTTCACGAGATCACATACGAGAATATAAAGATTCAAAGGATATGAGTCTGAGAGAAGTGCTGGGAGTTTTGAGAAGCAGAAGTGGCCCTCTAGACGGTCCACCTCCTAAGAGTACAGAGCGTGATACCATGATACTCAGTTCAAAGCATCTTTCCTTTTCAAAGCGACACCATCGATACACAACACCAAACAGCCCAGAAGACTCCTTGGCCATGTCGGGATTAAATCCAACAAAGGGATTATCCACATCTCTGCGCCATCACCAATCATGTTCATGGGAACCAAATTACATGACAAAGACAGAATCGTCGAGGGCCAAAGCTAGGGCTGAGAGTGAACCAAAACAACGACCCAAACGGGGGATGATGCACAATAACAAGCCTATACAATCATTGGATGGTCGAAGGCATTATATGTCCTCAAAGTCTACACGCTTCAATCATGGGAACCTGGATTTATTGGGCTATTAA 972 0.4475 MGKASKWIRNFLIGKKEEKYKQIDGAGQRSSIDVESPKLKLKWSFGRKTGKVAEHKISTSFDLPDSAKLQIRAILQNQPPKTLPMPFSDLEDAAATKIQAAFRSFLGRKALHALRGLVKLQALVRGHLVRKQTTATLRSMHALMTIQVRARIHRIQMAQESNLLEKRPSRDHIREYKDSKDMSLREVLGVLRSRSGPLDGPPPKSTERDTMILSSKHLSFSKRHHRYTTPNSPEDSLAMSGLNPTKGLSTSLRHHQSCSWEPNYMTKTESSRAKARAESEPKQRPKRGMMHNNKPIQSLDGRRHYMSSKSTRFNHGNLDLLGY 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3878 323 Pfam Protein of unknown function (DUF4005) 229 292 IPR025064 -
Dere01g3878 323 Gene3D - 89 143 - -
Dere01g3878 323 ProSiteProfiles IQ motif profile. 115 142 IPR000048 GO:0005515
Dere01g3878 323 MobiDBLite consensus disorder prediction 263 302 - -
Dere01g3878 323 PANTHER IQ-DOMAIN 5-RELATED 1 307 - -
Dere01g3878 323 SMART iq_5 90 112 IPR000048 GO:0005515
Dere01g3878 323 SMART iq_5 113 134 IPR000048 GO:0005515
Dere01g3878 323 MobiDBLite consensus disorder prediction 220 240 - -
Dere01g3878 323 MobiDBLite consensus disorder prediction 271 287 - -
Dere01g3878 323 ProSiteProfiles IQ motif profile. 91 119 IPR000048 GO:0005515
Dere01g3878 323 Pfam IQ calmodulin-binding motif 93 111 IPR000048 GO:0005515
Dere01g3878 323 Pfam IQ calmodulin-binding motif 118 132 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3878 Dere-ChrDere01 52701438 52702602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3878 1 285 IQD Protein Family AT4G14750 35.855 2.79e-36 134