Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3877 ATGCTAGGTTTGGTCTGTACCCAGGAGAGGGTTAATCTCTTACTTGTTGAATACATGGAGCAGTATGAAGTACTTGAGCAAATTGGAAAAGGTGCTTTTGGTTCTGCTCTTCTTGTGAGGCACAAGCATGAGAAGAAAAAATATGTGCTGAAAAAAATTCGCCTTGCCCGCCAAACTGAGCGATCTCGTAGATCTGCACATCAGGAGATGGAGCTCATCTCTAAATTCAAAAATCCATTTATTGTGGAGTATAAAGATTCATGGGTGGAAAAGGGATGCTATGTGTGCATTATTATAGGTTACTGTGAGGGCGGAGATATGGCAGAAGCTATAAAGAAAGCTAATGACATTCTTTTTCCTGAGGAGAAACTTTGTAAGTGGCTTGTTCAACTTCTTATGGCACTTGACTACTTGCATAGGAACCATATTCTTCATCGTGATGTCAAGTGTTCAAATATATTCTTGACGAAAGATCAAGACATACGCCTTGGTGATTTTGGACTTGCCAAAAAGTTGACTTCCGATGATCTCGCTTCGTCTGTTGTGGGAACTCCTAGCTACATGTGCCCTGAGCTCCTTGCTGATATACCTTATGGATCTAAATCAGATATTTGGTCTTTGGGATGCTGTATATACGAAATGACAGCCCATAAGCCTGCTTTTAAAGCATTTGATATTCAAGCACTAATAAACAAGATTAATAAGTCCATAGTCGCTCCGCTGCCAACGAAGTATTCTGGTGCATTTCGAGGTCTTGTTAAAAGCATGCTGCGGAAAAATCCAGAGCTTAGACCTAGTGCTGCAGAGTTACTTGGGCACCCTCATCTTCAACCTTATGTTCTCAAGATCCATCTCAAAATCAATAACCCCAGGCGAACTACACTCCCAGCCCATTGGCCAGAATCCAACTACATGAAGAAAACTAGATTTTTGGAGCCAGAAGATGATCCTGCTTCCATCTACAGGGATAAGCGGCATTCTTTCAGCAATGATCGGACTTTAAACCCTAGTATATCTGGAGCTGAGCAAGATTCCATATGCTCTACCTTAGAAATAGATTGTACCCCAGATCATTTGAATCACCGGTTAGTAGAACTTTTTGTTGGGGATAGCCCTAAAGTGAATGCAATCCGTAAGCCAGTTGTTTCCAGAACTATTAGCATTGCCAAGACTCCAAGACTGACCTCATCAAAAGCTTCTGCCAGCCCAAAGAAGCCAATTAAGTTTTCAAAAAATCATGAGCCACTTCCTGTTTCACACGATGCGAGAAAATTAGTCCATACAACTCGCAGAGCATCATTTCCATTGTCAACAAGAGGTGCTGTTCAACAATCACTTCGTAGGGCTGGTGTTCTTGGCCATACAAAATCACCTCATATTTCAGTCAACTCTCCCCGAATTGATAGGATAGCTGAATTCCCATTAGCATCATATGAGGATATACTATTTCCAATTAATAGAACTTTAAACTCTGCACGTGGTTCCTCAGGCTCCACTCCTTGTGGTGATCGTTCAATCATGAAAGACAAATGCACCATTCAGGTATGTGATGGAGCTGCTGTCAGGCCTAGTTTGACAGATCCCTGGCAGAGAACCAAGGGCAGCAAATATCAGGAAAATGACGAGGTGAAAAGTGGCTCCTCTGAACAAAATGCAACTGCTGGTGCATCAAGCCATACCTCTTCAGATTGGCGCCACCGGCATTTTGACACTTCATCGTACCAACAAAGGGCTGAAGCCTTAGAAGGATTGCTCGAATTTAGTGCAAGGTTGCTACAACAGGAAAGGTATGAAGAACTTGGGGTTTTGCTGAAACCCTTTGGGCCTGGGAAGGTCTCCCCACGGGAAACTGCTATCTGGTTGAGTAAAAGCTTCAAAGAAAACACCCTCAACCGTGAAGAATCCCTTTAA 1911 0.4275 MLGLVCTQERVNLLLVEYMEQYEVLEQIGKGAFGSALLVRHKHEKKKYVLKKIRLARQTERSRRSAHQEMELISKFKNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKANDILFPEEKLCKWLVQLLMALDYLHRNHILHRDVKCSNIFLTKDQDIRLGDFGLAKKLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMTAHKPAFKAFDIQALINKINKSIVAPLPTKYSGAFRGLVKSMLRKNPELRPSAAELLGHPHLQPYVLKIHLKINNPRRTTLPAHWPESNYMKKTRFLEPEDDPASIYRDKRHSFSNDRTLNPSISGAEQDSICSTLEIDCTPDHLNHRLVELFVGDSPKVNAIRKPVVSRTISIAKTPRLTSSKASASPKKPIKFSKNHEPLPVSHDARKLVHTTRRASFPLSTRGAVQQSLRRAGVLGHTKSPHISVNSPRIDRIAEFPLASYEDILFPINRTLNSARGSSGSTPCGDRSIMKDKCTIQVCDGAAVRPSLTDPWQRTKGSKYQENDEVKSGSSEQNATAGASSHTSSDWRHRHFDTSSYQQRAEALEGLLEFSARLLQQERYEELGVLLKPFGPGKVSPRETAIWLSKSFKENTLNREESL 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3877 636 ProSiteProfiles Protein kinase domain profile. 22 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g3877 636 SMART serkin_6 22 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g3877 636 MobiDBLite consensus disorder prediction 544 560 - -
Dere01g3877 636 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 19 586 - -
Dere01g3877 636 CDD STKc_Nek 21 276 - -
Dere01g3877 636 Gene3D Transferase(Phosphotransferase) domain 1 102 290 - -
Dere01g3877 636 ProSitePatterns Protein kinases ATP-binding region signature. 28 51 IPR017441 GO:0005524
Dere01g3877 636 Gene3D Phosphorylase Kinase; domain 1 6 101 - -
Dere01g3877 636 MobiDBLite consensus disorder prediction 393 415 - -
Dere01g3877 636 MobiDBLite consensus disorder prediction 524 566 - -
Dere01g3877 636 FunFam Serine/threonine-protein kinase Nek2 19 101 - -
Dere01g3877 636 Pfam Protein kinase domain 22 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g3877 636 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672|GO:0006468
Dere01g3877 636 SUPERFAMILY Protein kinase-like (PK-like) 18 322 IPR011009 -
Dere01g3877 636 FunFam Serine/threonine-protein kinase Nek3 104 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3877 Dere-ChrDere01 52696265 52700559 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3877 28 304 MAP Kinase Kinase Kinase AT1G53570 30.986 9.26e-37 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Dere01g3877 Pkinase 2.5e-64 CL0016