Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3876 ATGATGGCTCAACAAGCGGAGATGCACAATAAGCTTTTCGAGGACATGCTGAGAAGAGATGAGGAGACGTTTGCAAGAGAGGAAGCTTGGAAGAAGCAAGAGCTGGTTAGGATGAATAAGGAGCTTGAAATGATGGCACATGAGCAAGCGGTGGCGAGCAACCAACAAGGCACCGTAATAGGGTTCTTGGAGAAATTTGCGGCAAACTCTCCCAAAGTAATAAACGAGTCACCGCCTTCTTCTACGGTGATTCTGAATCATCAAGATATAAGCTCTTCTCTGGCTGTACCCATTACGTGCCCTAGTACACCAGAAGCTGCAGCAAAAAATCCTAGTTTAAGTCATGCCCAGGACACATTAGAAGTTGCACAGAACCCTAGTCCCCTCGATTTAGTTTCAGTGTGTAAGGTGTCGTTGAACACAATGTTGAATGAGAAAGGAGATGTAGGGAGGAGATGGCCAAGGGATGAAGTGCTAGCTTTAATAAACCTGAGGTGCAGTGTGAATAACAACCGCGAAGACAAGGAGGGAAACAAGGCTCCACTGTGGGAGCGAATCTCACAAGGGATGTCAGAGATGGGATATAGGAGAAGTGCAAGGAGGTGCAAAGAAAAATGGGAGAACATAAACAAGTACTTCAGAAAAACCAGGGATATTAATAAGAAAAGGTGGCTTAACTCCAGGACCTGTCCCTATTTCTATCACCTCGCTACTTGGTATACTCAAGGAAAGCTTGTTTACCAGTCTGAAATCAAGCCTGAAAGCCAAATGGTTTCAACGCTAAATCACCCATCCCAAACTCACCTTTCTCATCAAGTTATGCACGTCGATGGAGATGAGAAAACTATGATGCATGAATCTGAGGCTTTGGTTGCGGATCATCAGTTTTAA 891 0.4467 MMAQQAEMHNKLFEDMLRRDEETFAREEAWKKQELVRMNKELEMMAHEQAVASNQQGTVIGFLEKFAANSPKVINESPPSSTVILNHQDISSSLAVPITCPSTPEAAAKNPSLSHAQDTLEVAQNPSPLDLVSVCKVSLNTMLNEKGDVGRRWPRDEVLALINLRCSVNNNREDKEGNKAPLWERISQGMSEMGYRRSARRCKEKWENINKYFRKTRDINKKRWLNSRTCPYFYHLATWYTQGKLVYQSEIKPESQMVSTLNHPSQTHLSHQVMHVDGDEKTMMHESEALVADHQF 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3876 296 Gene3D - 153 215 - -
Dere01g3876 296 CDD GT1 151 217 - -
Dere01g3876 296 FunFam Trihelix transcription factor GT-2 153 215 - -
Dere01g3876 296 ProSiteProfiles Myb-like domain profile. 152 210 IPR001005 -
Dere01g3876 296 PANTHER FI21293P1 1 276 - -
Dere01g3876 296 Pfam Myb/SANT-like DNA-binding domain 151 236 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3876 Dere-ChrDere01 52687629 52688591 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3876 1 279 Trihelix Transcription Factor Family AT5G28300 42.525 1.86e-66 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Dere01g3876 Myb_DNA-bind_4 2.8e-18 CL0123