Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3875 ATGGCTTTCCCACACCCAATACTAATACATTTCCGCCCTTTGATCCCTTATCACTTGCCTCTTCAACAACCCAATCTATTGCACCCCTTGCACCACTCTCCTCTTACTCCTACTCCAGCCCACAAACATGAAGATGACATGCAAAATAATAGCATCAGCAGAGTGTCAATGAACTTAGAGATCGAAAAACAACGCCAACTACCTGAGCTCATAGATTCCTGCTGGACTCAAGATGAAGTTCTTGCCCTACTCAGGACCAGATCTAGCATGGAGACTTGGTTCCCAGACCTCACTTGGGGACATGTCTCAACGAAGCTAGCAAAGCTTGGATTTAAGAGAAGTGCAAGTAAAGGTGATCATCAAACCCCAAAGGTTGAGGTTGGGACCGTAAAGTTGACCCAACAACTAGAAAAGGCAAGGGAGGGACAAGACAAGAAGTCGGGCCACGCATTGGAAGAGGTTTCTACCGAACATGACACATCAACACCCACCATTACCAAACAATATGAGGTGGAAATATGA 522 0.4579 MAFPHPILIHFRPLIPYHLPLQQPNLLHPLHHSPLTPTPAHKHEDDMQNNSISRVSMNLEIEKQRQLPELIDSCWTQDEVLALLRTRSSMETWFPDLTWGHVSTKLAKLGFKRSASKGDHQTPKVEVGTVKLTQQLEKAREGQDKKSGHALEEVSTEHDTSTPTITKQYEVEI 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3875 173 MobiDBLite consensus disorder prediction 137 156 - -
Dere01g3875 173 Gene3D - 75 120 - -
Dere01g3875 173 MobiDBLite consensus disorder prediction 157 173 - -
Dere01g3875 173 MobiDBLite consensus disorder prediction 136 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3875 Dere-ChrDere01 52686459 52687553 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3875 75 114 Trihelix Transcription Factor Family AT5G28300 67.500 1.96e-13 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Dere01g3875 None None None