Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3838 ATGGGGTGTGTGATTAGTCGAGAAGTAACATCGGGAATAATTTCTGAGGCGAAAGAGGAGAAGAATTTGAGTACCGAATCCAAGAGGAAGGTAGATGAAGCGTCGGCTCAGAACGGTGGGAACCAAAAGGAAGAGAAGGGCAGTGATGATGAAGGGATCCAGGCCCAACGGCCTAGGGGCGAAAGAAGAAGATCAAAGCCAAACCCGAGGCTAAGTAATCCTCCCAAACATTTGCGAGGGGAGCAAGTAGCAGCTGGATGGCCACCCTGGCTTACGGCTGTTTGTGGTGAAGCACTTAATGGATGGATTCCCCGAAAGGCTGACACATTTGAGAAAATTGATAAGATTGGCCAAGGAACGTATAGTAATGTTTACAAGGCTAAAGACATGTTGACGGGTAAAATTGTTGCACTAAAGAAGGTTCGATTTGACAATTTGGAGCCTGAGAGTGTAAAATTCATGGCTAGAGAAATTCTTATTCTGAGAAGATTGGACCATCCTAATGTTGTAAAGTTGGAGGGTTTAGTTACATCAAGGATGTCATGCAGTTTGTATCTGGTATTTGATTACATGGTGCATGATTTAGCTGGACTTGCTGCAAGCCCGGGAATCAAGTTCACAGAGCCTCAGGTCAAATGTTACATGCATCAACTACTTTCTGGAATTGAGCACTGTCATAAACGGCATGTACTTCACCGTGATATTAAAGGATCAAATCTTCTTATTGATGATGGTGGAATACTTAAGATTGCTGACTTTGGACTAGCTTCAATCTTTGATCCAAACCACAAGCATCCCATGACTAGTCGTGTAGTTACCCTATGGTACCGACCTCCTGAGTTGCTTCTTGGTGCCACAGATTATGGTGTGGGTGTGGACCTCTGGAGTGCAGGTTGTATTTTAGGAGAGTTATTGGCTGGGAAGCCAATAATGCCTGGTCGTACAGAGGTGGAGCAACTGCATAAGATATACAAACTATGTGGTTCACCTTCTGATGAGTATTGGAAGAAATCAAAGTTGCCTAATGCTACCTTGTTTAAACCCCGAGAGCCATACAAGAGGTGCATAAGAGAGACATTTAAAGATTTTCCTCCTTCTGCACTGCCTCTTATTGATACCCTTCTTACCATCGATCCAGCAGAGCGGAAGACTGCCTCAGATGCTTTAAAGAGTGAGTTCTTCACCACAGAACCTTATGCTTGTGATCCTTCTAGTCTTCCAAAATATCCCCCAAGCAAGGAAATGGATGCTAAACGACGGGATGATGAAGCAAGGAGAATAAGAGCCACAAGCAAAGCTCAGGCTGATGGTGTAAAGAAACCACGAACTCGTGAACGTGCTAAAGCTTTTGCTGCCCCTGAAGCCAATGCAGAGCTTCAATCTAACATTGATAGAAGGCGTCTAATCAGTCACGCAAATGCTAAGAGCAAGAGCGAAAAGTTTCCTCCACCACATCAAGATGGACAACTTGGGTACCCTTTGGGTGCTTCAAATCATATAGATCCAGACATTGTTCCTCCTGATGTCGCTTTCAGTTCAACCTCTTTCACTTATTCAAAGGAACCATTCCAAGCTTGGTCAGGTCCCATAGGTAATACTGCTACCATTGATGCACCAAAGAAGAAGAAGAAACACACTGCAGCTGATACATTGGATTTATCGAGACCACACACAGTATCCCTCAAGGATAAGGTTAAAGGAAAGAAAACCAAAGCCTAG 1719 0.4404 MGCVISREVTSGIISEAKEEKNLSTESKRKVDEASAQNGGNQKEEKGSDDEGIQAQRPRGERRRSKPNPRLSNPPKHLRGEQVAAGWPPWLTAVCGEALNGWIPRKADTFEKIDKIGQGTYSNVYKAKDMLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFDYMVHDLAGLAASPGIKFTEPQVKCYMHQLLSGIEHCHKRHVLHRDIKGSNLLIDDGGILKIADFGLASIFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILGELLAGKPIMPGRTEVEQLHKIYKLCGSPSDEYWKKSKLPNATLFKPREPYKRCIRETFKDFPPSALPLIDTLLTIDPAERKTASDALKSEFFTTEPYACDPSSLPKYPPSKEMDAKRRDDEARRIRATSKAQADGVKKPRTRERAKAFAAPEANAELQSNIDRRRLISHANAKSKSEKFPPPHQDGQLGYPLGASNHIDPDIVPPDVAFSSTSFTYSKEPFQAWSGPIGNTATIDAPKKKKKHTAADTLDLSRPHTVSLKDKVKGKKTKA 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3838 572 MobiDBLite consensus disorder prediction 13 33 - -
Dere01g3838 572 ProSiteProfiles Protein kinase domain profile. 110 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g3838 572 MobiDBLite consensus disorder prediction 537 565 - -
Dere01g3838 572 SMART serkin_6 110 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g3838 572 SUPERFAMILY Protein kinase-like (PK-like) 104 401 IPR011009 -
Dere01g3838 572 FunFam probable serine/threonine-protein kinase At1g54610 97 192 - -
Dere01g3838 572 PANTHER CELL DIVISION PROTEIN KINASE 108 398 - -
Dere01g3838 572 MobiDBLite consensus disorder prediction 530 572 - -
Dere01g3838 572 FunFam probable serine/threonine-protein kinase At1g54610 193 434 - -
Dere01g3838 572 MobiDBLite consensus disorder prediction 402 444 - -
Dere01g3838 572 ProSitePatterns Protein kinases ATP-binding region signature. 116 139 IPR017441 GO:0005524
Dere01g3838 572 Gene3D Phosphorylase Kinase; domain 1 97 192 - -
Dere01g3838 572 MobiDBLite consensus disorder prediction 43 68 - -
Dere01g3838 572 ProSitePatterns Serine/Threonine protein kinases active-site signature. 230 242 IPR008271 GO:0004672|GO:0006468
Dere01g3838 572 CDD STKc_CDK9_like 110 394 - -
Dere01g3838 572 MobiDBLite consensus disorder prediction 1 82 - -
Dere01g3838 572 MobiDBLite consensus disorder prediction 412 444 - -
Dere01g3838 572 Pfam Protein kinase domain 110 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g3838 572 Gene3D Transferase(Phosphotransferase) domain 1 193 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3838 Dere-ChrDere01 52419883 52424259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3838 102 434 Core Cell Cycle Gene Families AT5G10270 51.576 9.60e-121 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Dere01g3838 Pkinase 7.4e-66 CL0016