Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3823 ATGCGAGTTGATAGTTTTACCACCTGTCCAGATCCCTGTCGAGCTAAGCAGCGATTCTTACGGACTCTGGTGCGAACTTTCATGGCGAATGGGGGTGACCAAAAAGTTGATGGTTTATGGGATAGTAAAAAGGATTCTGCTAACAAAACAAAGACGGTCCCAGCGAATGATGCTTCTGTAGTCAAACATAAAAAACGAGGCTTTCTGTTTCGTTCCTCTGCTTCTGCCCAAGACTTGAGACATTTTGATTTGGAGAAAGAGAAAGAAGATGATTCTTCTCCTAGAGGAGTGTTAGAAGCCTGCGTTCGGGACTTGGACTCTCTACAATCAACAGAAATGGAGACCCATTCATCAAAGTCCAAGGCACTTCTTAATTGGAGCAAATATTTCAAAAATTGGAAAAAGAGATCATTTAAGCGCCTAGCTTCGTTCCCTCCTATTAGTGTGCCAAGAATACCCAAAGGGAAAAGCAAAAGCACTAGAGAAAATCCTGTTCTGAGTAATATATACAACTTCAAGTCCTCGTTGGTGAATTTCAGACTCTCTGAACTGAGAAATGCAACCAACAATTTTAGTAATGAAAATTTGATTGGAAGAGGCGGCTATTCTGAAGTTTACAGGGGTCGTCTCAAAGACGGGAGCCTAATAGCTGTAAAGAGACTGAGTAGAGGGACTCCAGACGAGCGGACTGACGACTTTCTATCTGAGCTTGGTATTATTGCTCATGTTGACCACCCTAATACTGCAAAGCTTATTGGATGTGATGCAGGAGGAATGCACCTTGTCTTCCAACTATCTCCATTGGGAAGCTTAGGATCTCTTCTTCACGGTTCAAATAATAACAAATTAGCTTGGAGTAAAAGATATAAGATTGCTCTGGGCATTGCTGATGGCCTCCTCTACCTTCATGAGAGTTGTCACAGGCGTATCATTCATAGAGATATTAAGTCAGAGAATGTCCTGCTCACAGAAAATTTTGAGCCACAGATTTGTGATTTTGGGCTGGCAAAGTGGTTACCCGAACAATGGACTCACCACAATGTATCAAAATTTGAAGGCACGTTTGGGTATTTTGCTCCTGAATATTTCATGCATGGCATAGTAGACGAGAAAACCGATGTCTATTCTTTTGGGGTTCTACTCTTGGAGCTTGTAACTGGCCGTCCAGCTGTGGATCAAATGCAGGAGAGTGTTGTGACATGGGCAAAACCTTTGCTTGACGATAATAATGTTAAGGACCTTGTTGATCCTTCTCTTGGCAATGACTATGACCGAGACCAGATGGATCGTGTCGTTTTGACTGCATCTCTGTGCGTTGAGCACTCCCCTCTCTTACGTCCCTGCATGAGTCAGGCTGCAATACTGCTAAGAGGTGATGACTATGTCATGCAAACTACAAAAGAAAGCCGGAGGCCGTCTTTCCATAGAACTTACTCAGAAGAACTTCTGGATGCGCAGGAATACAACTCAACCAAATATCTAAATGATCTCAATCAACTTAAGCAGCTTGCCTTGGGATCTTAA 1524 0.4285 MRVDSFTTCPDPCRAKQRFLRTLVRTFMANGGDQKVDGLWDSKKDSANKTKTVPANDASVVKHKKRGFLFRSSASAQDLRHFDLEKEKEDDSSPRGVLEACVRDLDSLQSTEMETHSSKSKALLNWSKYFKNWKKRSFKRLASFPPISVPRIPKGKSKSTRENPVLSNIYNFKSSLVNFRLSELRNATNNFSNENLIGRGGYSEVYRGRLKDGSLIAVKRLSRGTPDERTDDFLSELGIIAHVDHPNTAKLIGCDAGGMHLVFQLSPLGSLGSLLHGSNNNKLAWSKRYKIALGIADGLLYLHESCHRRIIHRDIKSENVLLTENFEPQICDFGLAKWLPEQWTHHNVSKFEGTFGYFAPEYFMHGIVDEKTDVYSFGVLLLELVTGRPAVDQMQESVVTWAKPLLDDNNVKDLVDPSLGNDYDRDQMDRVVLTASLCVEHSPLLRPCMSQAAILLRGDDYVMQTTKESRRPSFHRTYSEELLDAQEYNSTKYLNDLNQLKQLALGS 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3823 507 PANTHER OS08G0249100 PROTEIN 48 490 IPR046958 -
Dere01g3823 507 SUPERFAMILY Protein kinase-like (PK-like) 170 454 IPR011009 -
Dere01g3823 507 Gene3D Transferase(Phosphotransferase) domain 1 267 480 - -
Dere01g3823 507 ProSitePatterns Serine/Threonine protein kinases active-site signature. 310 322 IPR008271 GO:0004672|GO:0006468
Dere01g3823 507 Gene3D Phosphorylase Kinase; domain 1 153 263 - -
Dere01g3823 507 ProSitePatterns Protein kinases ATP-binding region signature. 197 219 IPR017441 GO:0005524
Dere01g3823 507 Pfam Protein tyrosine and serine/threonine kinase 194 399 IPR001245 GO:0004672|GO:0006468
Dere01g3823 507 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 267 470 - -
Dere01g3823 507 SMART serkin_6 191 445 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g3823 507 ProSiteProfiles Protein kinase domain profile. 191 462 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3823 Dere-ChrDere01 52312308 52316244 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3823 171 502 Receptor kinase-like Gene Family AT1G53420 39.130 1.70e-69 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Dere01g3823 PK_Tyr_Ser-Thr 2.8e-40 CL0016