Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3811 ATGACGCTGGGAAGAGGACCCAAGTCGGCTTCTTTCTGCTTTGTGCTTTGTAGGGCCTCCAGCTCAGAATCGTGGTCTGTGCATGCGGTCGCGCCAGCAATAGAGACAATCGGAGCCATGGTCCTAGAAGCAGTGGTCTATCCTCAAGACCCATTCTGCTATGGCGGCAAAGACCTCTACAATTTCAACTTCTTACCGCCCCCACCCAACTGGGACTACCAACACCAACAACAACACCAACACCAAGCTTCTCTTGATTTTCCCGAGAACCAAACACAAACTAGTTATGATTATCCTTATGCAGATTGGGATTGTTCGACCCCCTCATCGTTCTTACCCCACTCCTACTCCAGTGAAGCTCATCCCTCCTACCCTTCCTCCTCAGACACCAACAATGGCACCATTTCAATTCCAAGTGAACCCCACAATTTAGATACCTCAGTTTCCATGCCTGCTCGTCCCAAGAGGCGCCGAGCCAAAACCCGAAAGAATAAGGAAGAAATTGAGAACCAGAGAATGACTCACATTGCTGTGGAGCGCAATCGAAGAAAACAAATGAACGACTATCTGTCTGTTCTTCGCTCTTTGATGCCTGAATCCTATGTCCAGAGGGGTGACCAAGCTTCTATAATTGGAGGAGCAATTAATTTTGTAAAAGAGCTTGAGCAGAGGTTGCAATTTCTTGGTGCTCGGAAAGAAACACGAGGGAAAAGCAAATCAAAACCCTCCTCAAATTTGCCTTTTTCTGAGTTCTTCACATTTCCTCAGTACTCAACTGCCAGTTCTGCTTCTAGTGGGTGCGACAATAATTCTAGGGCTATGGGAGAGGGAATGGGTGAGGTGATTCAGTCTGGTGTTGCTGATATAGAGGTGACCATGGTGGAGAGCCATGCAAATCTCAAAATAAGATCCAAAAAGCGACCAAAGCAGCTCTTGAAGATAGTCTCTGGCTTGCATAGCATGCGTCTCACTATCTTGCACTTGAATGTTACAACCACTGGTGAAATTGTGCTCTATTCTCTGAGTGTTAAGGTAGAAGATGATTGCAAGCTGGGTTCAGTGGATGACATAGCCGCAGCCTTATTTCAAATGATGGATAGGATTCATCAGGAGACAATGTTGAACTAG 1128 0.4637 MTLGRGPKSASFCFVLCRASSSESWSVHAVAPAIETIGAMVLEAVVYPQDPFCYGGKDLYNFNFLPPPPNWDYQHQQQHQHQASLDFPENQTQTSYDYPYADWDCSTPSSFLPHSYSSEAHPSYPSSSDTNNGTISIPSEPHNLDTSVSMPARPKRRRAKTRKNKEEIENQRMTHIAVERNRRKQMNDYLSVLRSLMPESYVQRGDQASIIGGAINFVKELEQRLQFLGARKETRGKSKSKPSSNLPFSEFFTFPQYSTASSASSGCDNNSRAMGEGMGEVIQSGVADIEVTMVESHANLKIRSKKRPKQLLKIVSGLHSMRLTILHLNVTTTGEIVLYSLSVKVEDDCKLGSVDDIAAALFQMMDRIHQETMLN 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3811 375 SMART finulus 176 227 IPR011598 GO:0046983
Dere01g3811 375 MobiDBLite consensus disorder prediction 116 146 - -
Dere01g3811 375 Gene3D - 155 236 IPR036638 GO:0046983
Dere01g3811 375 PANTHER MAX DIMERIZATION, MAD 70 371 - -
Dere01g3811 375 Pfam Helix-loop-helix DNA-binding domain 171 222 IPR011598 GO:0046983
Dere01g3811 375 MobiDBLite consensus disorder prediction 116 165 - -
Dere01g3811 375 CDD bHLH_AtFAMA_like 173 245 - -
Dere01g3811 375 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 170 234 IPR036638 GO:0046983
Dere01g3811 375 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 170 221 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3811 Dere-ChrDere01 52251598 52252934 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3811 40 345 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 47.692 8.57e-72 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere01g3811 HLH 5e-10 No_clan