Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere01g3810 | ATGACCAGGCGGATCGCTACCCTCTGCTTCTGTTTCTGCTTCCTCTTCCCCCTCCTCGCCGTAGCACAACCCCCACCCAGTGATAATAATAATGGCCCACCCCCACCCGACCAGCTCAACAGCTTCACCCCTTCCGTGGCCATCATCATCGTCATATTGATTGCCGCTCTTTTCCTCATGTGCTTCTTCTCCATCTACATACGCCACTGCGCCGATTCTCCCTCCGGCAGCGTTCGCCCCCTCGGCCTCGGCCCTGCGGCCGGCCGTTCCAGAGGCGCCCCACGTGGCCTTGATCCCGCCGTCATCGACAGGTTTCCGACTCTGGAATATTCGGAGGTTAAGATTCACAAGATAGGGAAAGGCGCTCTGGAATGCGCCGTCTGCCTGTGCGAGTTCGAGGACACCGAAAAGCTGCGTTTGATACCCAAGTGCGATCACGTCTTCCACCCTGAATGCATCGACGAGTGGTTGGCTTCCCATACCACCTGCCCCGTTTGCCGAGCCAACCTGGTTCCCCAGCCTGACCAGTCCATCCACGGTCTTCCAATCATCGCCCAAGACGTCGCAGATGTTGAAGCTCAAAACGACGCCGTGGAACCGCAATTCGAGCAACAACACAGTGCGGAGGTTGACCCAGAACCTCCCCAGCCTGAAATTCTTTGCCTTAATCAGTCCATGAAGCGAAACCGCACACGAGGGTCTCGATCGGGTCGGCCACGACGGTTTCCCCGGTCACACTCGACCGGCCATTCCTTGGTTCAGCCGGGTGAAGACACAGAACGGTTCACCCTGAGATTGCCTGTGGAAGTGAGGAAGCAGATACTAAACCGGCAACTGCATCGGGCGACAAGCATGGTGGTCTTGCCCAGAGAAGGTAGTTCTAGACGGGGCTATCGAACCAGTGGCGATGGCAGTAGTAGAGGCAGGTTTTCGAGGAGGCTGGACAGGGGATTTAAATCAGACCGGTGGGTTTTCACGATGGCGCCGCCGTTCTTAATAAGGGCATCATCTATTAGATCCCCGAAGGCGAGTGGTAGCGCCGGTGAAGGGAGCTCCGGTCAACCCATCACGCCGCCGCCGGGGGATGCGATCCGCCCTTCGGTTTAA | 1107 | 0.5781 | MTRRIATLCFCFCFLFPLLAVAQPPPSDNNNGPPPPDQLNSFTPSVAIIIVILIAALFLMCFFSIYIRHCADSPSGSVRPLGLGPAAGRSRGAPRGLDPAVIDRFPTLEYSEVKIHKIGKGALECAVCLCEFEDTEKLRLIPKCDHVFHPECIDEWLASHTTCPVCRANLVPQPDQSIHGLPIIAQDVADVEAQNDAVEPQFEQQHSAEVDPEPPQPEILCLNQSMKRNRTRGSRSGRPRRFPRSHSTGHSLVQPGEDTERFTLRLPVEVRKQILNRQLHRATSMVVLPREGSSRRGYRTSGDGSSRGRFSRRLDRGFKSDRWVFTMAPPFLIRASSIRSPKASGSAGEGSSGQPITPPPGDAIRPSV | 368 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere01g3810 | 368 | CDD | RING-H2_EL5-like | 124 | 167 | - | - | |
| Dere01g3810 | 368 | MobiDBLite | consensus disorder prediction | 339 | 353 | - | - | |
| Dere01g3810 | 368 | MobiDBLite | consensus disorder prediction | 290 | 311 | - | - | |
| Dere01g3810 | 368 | SMART | ring_2 | 125 | 166 | IPR001841 | - | |
| Dere01g3810 | 368 | ProSiteProfiles | Zinc finger RING-type profile. | 125 | 167 | IPR001841 | - | |
| Dere01g3810 | 368 | PANTHER | RING FINGER DOMAIN-CONTAINING | 25 | 176 | - | - | |
| Dere01g3810 | 368 | Pfam | Ring finger domain | 124 | 167 | IPR001841 | - | |
| Dere01g3810 | 368 | MobiDBLite | consensus disorder prediction | 335 | 368 | - | - | |
| Dere01g3810 | 368 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 88 | 172 | IPR013083 | - | |
| Dere01g3810 | 368 | SUPERFAMILY | RING/U-box | 107 | 174 | - | - | |
| Dere01g3810 | 368 | MobiDBLite | consensus disorder prediction | 197 | 258 | - | - | |
| Dere01g3810 | 368 | FunFam | E3 ubiquitin-protein ligase ATL6 | 86 | 173 | - | - | |
| Dere01g3810 | 368 | MobiDBLite | consensus disorder prediction | 231 | 245 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere01g3810 | Dere-ChrDere01 | 52235339 | 52236445 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere01g3810 | 8 | 335 | Rapid Response to Elicitors | AT3G05200 | 45.672 | 3.21e-86 | 265 |