Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3798 ATGGATCACCAAGGGCATAGCTCAAACCCATCTATGGGGGTTGTTGGTAGTGGAGCTCAATTACCTTATGGTTCTAATCCTTACCAGTCAAACCAAATATCTGGGGCACCCGGTTCTGTCGTTACATCAGTTGGGACCATTCAATCTACTGGTCAGCCTGCTGGAGCTCAGCTGGGACAACATCAACTTGCTTATCAGCATATTCATCAGCAACAGCAGCAGCAACTTCAGCAACAACTCCAATCCTTTTGGGCAAATCAATACCAAGAAATTGAGAAGGTAGCTGATTTCAAGAACCACAGCCTTCCCTTGGCAAGGATCAAGAAGATTATGAAAGCCGACGAGGATGTTAGGATGATATCGGCCGAGGCACCTGTTATATTTGCAAGGGCATGTGAAATGTTCATTTTGGAGTTAACCTTGCGTTCTTGGAACCACACAGAAGAAAACAAAAGGAGAACACTCCAAAAAAATGATATCGCAGCAGCAATCACGAGGACTGACATTTTTGATTTCTTGGTAGATATTGTGCCGCGGGAGGACTTGAAAGATGACGTACTTGCATCAATTCCTAGAGGAACCATGCCAGTTGCTGGGCCTGCTGATGCACTTCCTTATTGCTATATGCCACCGCAGCATGCGCCTCAAGTCGGTGCTGCTGGTGTCATAATGGGCAAGCCTGTGATGGACCCGACTGTATATGCTCAACAACCTCATCCCTACATGGCACAACAAATGTGGCCTCAGCAACCAGAGCAACAGCAATCATCTCCAGATCATTAG 783 0.4649 MDHQGHSSNPSMGVVGSGAQLPYGSNPYQSNQISGAPGSVVTSVGTIQSTGQPAGAQLGQHQLAYQHIHQQQQQQLQQQLQSFWANQYQEIEKVADFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDDVLASIPRGTMPVAGPADALPYCYMPPQHAPQVGAAGVIMGKPVMDPTVYAQQPHPYMAQQMWPQQPEQQQSSPDH 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3798 260 MobiDBLite consensus disorder prediction 1 15 - -
Dere01g3798 260 MobiDBLite consensus disorder prediction 1 20 - -
Dere01g3798 260 FunFam Nuclear transcription factor Y subunit gamma 66 179 - -
Dere01g3798 260 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 101 164 IPR003958 -
Dere01g3798 260 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 64 236 - -
Dere01g3798 260 SUPERFAMILY Histone-fold 72 173 IPR009072 GO:0046982
Dere01g3798 260 Gene3D Histone, subunit A 63 179 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3798 Dere-ChrDere01 52139573 52140355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3798 1 247 CCAAT-HAP5 Transcription Factor Family AT1G08970 61.290 3.96e-90 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Dere01g3798 CBFD_NFYB_HMF 5.8e-18 CL0012