Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3778 ATGGCAGACTCACAGTGTGATTCGAAAATGTTCAGTGTTCGGATTGTGTCCATCGACTACTACATGGCGCCGCCGATCCCCGACTTGGATATCTGTTACAGTAGCTTCCATGGTGGGAAGGTGAATGAGGTTCCTGTTGTTAGAATATATGGTTCTACTCCAGCTGGGCAGAAAACTTGTTTGCACATACATCGGGCTTTGCCCTACATGTATGTGCCATGTGCAGATATACCTCTTCATCTAGATCAAGAAGATGCGTACACATATAAGGTATCTGCTTCTCTTGAGAAAGCCTTGAAGCTTAAAGGTGGCCCAGGTTTGACAAGACAACATGTACATGGCTGCAGCCTCGTAAGAGCAAGAAAATTTTATGGTTATCATTCATCAGAGGAGTTATTTGTGAAGATATATCTATATTATCCACAAGATGTCTCTAGAGCATCTAATCTACTATTGGCTGGTGCTGTTCTTGACAAAAGCTTACAGCCCTATGAATCACATATTCCATTCATTCTTCAGTTTCTGGTTGACTATAACTTGTATGGCATGGGTCATCTGCATCTGTCAAAAATGAAGTTCCGCCACCCCATTCCAGATTCTTCCCACAAGAAATTGAATTTCAATAGTCCACAGACAGTGGCAGATCCAGATGGTGATGCATGTTTAGGGTCAGCAATGTGGACATCTTCTATAATCCCAGCTGATTGGATGTGGCAACCTGCTAGTGACTTGGGCATCTCATCAAATCATGAGGCTCATTGCCCTAAACGTCAAAGCACATGTGAACTGGAGGGAGATGCTTCTGTAGATGAGATTCTTAATCAGCAGTTTAAAATGTATTCATCCCTCTCACAAACCCGCTCAGACGTGCAAATGGTTCAGTCACTTGTGCCAATCTGGAAGGAACAGCAGGAAAAGACTGGGATTTATGAGGCTACTATGCCTTCTGATCCTGGCAAACCACTACCAGAAATTGTTATGAAAAATCTCTCTGCCGGTCTTGATTTGGAGAAAAAATTTCTTGAACTGTGCAGTGAAGCTGAAACCTCTGCATCTTTTACTCCCTCTGAGAAGGAATTAAGAGAAACAGACATAATAGGCTCAGCATCGCCACCAGCTTCACTCTGCAAAGATGCCATATTGCATGAGGAATGGACTGATGCAAATGCTGCAGATAAGGAAACACTGAATCTCCTAAAGTGGCTTGCAACTTCTCAGGCTGCAGAGGATATCAACTCTGATGATGAACTTATTCATGAAACTATTTTGAGTCCCTTGTTATCTGCTACAACAATTGATAAGGTGCTGGAGAAAGCTAATATGGATTACAAGAGTGAGTCCCAAAAGGAATGTCAGGATATTCTAGATTCAATTGATGATCTACTTGAGTTGGAGTCATCAAAGAAAAATCTGCCTTTTTCCTCAAATGTTGAGCGTCCTATTGAGTCTTCATCAAACAACATGATTCCCCAAGTTGATGGTTCTGGTGATGATGAGATTTCAAGTCCACATGGCAGTTCATTTGCAGTGGACAAAAAAAGTGAATCCAAAAGGGCGTCTGAATACTGTATACTGCAGAATACTAAAACAAGTACTTTAGATAACAGGAATGAAGTGTGGGGATCTTTGCCACTTTCCATGACTCATAAGAATGTTCAATATGCTAGTTTACATGTTGTCCATCCATTTGAAAGGGAAACTGGAGATTCTGTTTTGATCAGAAATGAGATGGAGAATAGTGCCTGTGATATAAAGAATGAGGATAAAGGTGCGTCAGATTTAAAAGAAGTACATACATTGGCTAATTGCTCTGTGCGGGATTTGATGAGGAGAAAGAGATGCCACCGAGTTGAGCAAGATGACTGTGGATCTGGCATAATAAGAAAGCTTTTGTTAGACAGGGATGAGAAACAGAGCTCACGCCTTTGGCAAAAGCAACTGAGCTTGAAATCACTGAAAACTGATGATGGAGACACAGAAGTCCAGACGAACTGTGATCTTAAAATGAGCAATCATGATTATTTAGTGCGAGGGAAACTTCCCCTTGTAGCTGGCAGTGATAGTTGTCTACAGGCTAGTATGCTGAAAGATGAAAATTTTGTTCTACCTCAAATGGATGGTCTGGAAACATGTGCAGCATTGATAAACTCTTCAGATGGAGATTCTTCTCTGATGAGTACTGAAGTGGGCCTCCATGAGCCTAAAAAGTTTGACTCTACTTGTTCTACTTATTACTCTGAGGCTTCCAGTGGTAAAAAGCTCAAGGTTGGCCCAACATATGTACAAAGTGCAGCTTCTGATGCTTATGCCCAGAAATTCAAGCTCTTTTTTGATGATCAGCTTTTGGTAACTGATACTGAACATAAAGTTAGAGCTCCTGACAATTGTCAGCGAATTGACTTTGCAGCTTTTAGTAGTGTACAGAGGTCTTCTATTGAGAATGTAGTTTCTGGCGAAGATAATTGCATACATAAATGTTCTCATGGAAGCAAATCCTATGAGGCACATGGTCAGTTTAAGGGTAAGTCTTATGAGAATGCTGTGGGCATGAATACTGCAAATGGCATGCAAGTACTGCAATGTGAGAAAAGTGATGAGAAAAAACCTAGAGAAAATTTGGGTTTTTGTGAGACTATTGACTCAGAACCCATTGTCAATGATATGGTGGGTAATCACATGAAATTCACCATTAGCAGGACACATGCCATGGCTGATGGGAATTCTGAAAGTAATCCATTCTTGCCTGCTGTCTCTAATTCCCATTTGCATTCGGATGACAAAAGTTGTGATGAAATTTCAGGAAACATGGAAATGGCTAGTGGAAGTAGCCACCTGGTGAAAGCTCTGGGTGATGTTAGTCTCTTTACTGCAGGGGTTTCCCAGAAAGAGATAGGAACTTGGAACAAGCATGTTGCAATTAGCCCCCCTAATTCTGAAGGGAAAAAGGTCTTGGGTGTTGCAACTTACTATCAAAATGATGGCTCTCACCTGTGCCTATTGAGACCCAAAATTTTGCCTCCTTCTGTGTGTAGTGTTCGGAGATGGCTATTTTGTGATGAGAGAGATCAAATGTTTCAAGAAACTGAAGCAAAGGATAAGCATCTGCCTGAATGTTCTACCAGAACTCATCTTAGTTCTAAGCAGGTCCAAGATTTTGATTCTGAAAAGATGCCTCCATGCGTCAGTGTAGGACAAATAAAAGGAGTTAAAACATGCTTGGATAGCTCACAAGATATTTCTCAGATATCAGGCCCTGACAGGAAATCAAGGTCTACTCCTCTAAGTCAAATTGGATTTCGAGACCCTGCAAGTATTGGTCATGGACAGCAATTGACATTACTTAGTATAGAGGTTCTTGCAGAATCAAGAGGAGACCTTTTACCTGATCCTCGGTTTGATGCCATCAACATTGTAGCTCTTGGTTTTCAAAATGATAGTGACACTATTATTGACGTTCATGCCCTTTTGCATTGTAAACTTGAACCTTGTCAAAGAAATTTTGACGGTCTATCAGGCTGCAAGGTGTTGGTCTTCACTGATGAAAAGTGCTTGCTAAAAAAATTAATCAAGATAGTGTCTTCATCTGACCCAGATATTTTGATGGGTTGGGACATTCAAGGGGGTTCTCTTGGTTTTCTAGCAGAAAGGGCCTCACATCTTGGGTTAGGATTACTTAATAGTTTATCACGTACTCCGTCTGAGTCTTGGATTGCTTCTGAAGACACTGGAACTTCTGAGAAAGATATATTGGAACCTGTCATTCCTGATATATCTAGTGCAGATGATGTACAAGAAAGTTCAATAATTGAGGATGAATGGGGACGAACACATGCCAGTGGAGTTCATGTTGGTGGCAGAATTGTCCTTAATGTGTGGCGACTGATCCGTGGAGAAGTTAAGCTCAATTTATACTCAGTTGAAGCTGTAGCTGAAGCTGTATTGAGGCGGAAAGTTCCATCAATTCACTACAAGGTAAATCGAACATCAGAACTTGCTCGTATCTTTGGCATAGATTTTTTTTCTGTTCTCTCCAGAGGTTCACAATATCGTGTTGAATCCATGTTTCTGAGGTTGGCACATATACAAAACTATCTTGCCATCTCTCCTGGGAATCAACAGGTTGCTTCTCAGCCTGCCATGGAGTGCCTGCCCCTTGTAATGGAACCAGAGTCAGGATTTTATTCAGACCCTGTTGTTGTATTTGACTTTCAGTCATTATATCCTTCCATGATAATTGCATACAACCTTTGCTTTTGTACCTGCCTTGGAAAAGTTGTGGCATCAAAGGCAAACACACTTGGGGTTAGTTCATTTTCCCCAGAGCAACATGTTCTGCAGCATTTAAAAGATCAAATCTTGCTCACTCCAAATGGTGTTATGTTTGTTCCTTCCAAGGTACGTCGAGGTATATTACCACGCTTATTGGAAGAAATTTTATCAACTAGGATTATGGTGAAACAAGCAATGAAGAAGTTGGCTCCTTCAAAGCAAGTTCTTCAGCGGATATTTAATGCACGACAGCTTGCTTTGAAGCTTATATCAAATGTGACATATGGCTATACCGCTGCTGGATTTAGTGGTCGCATGCCTTGTGCGGAGCTTGCAGATAGTATTGTTCAATGCGGCCGTTGTACACTGGAAAAGGCTATATCATATGTAAATCTGCATGATAAGTGGAATGCAAAAGTCATTTATGGAGATACTGACAGCATGTTTGTTCTCCTTAAAGGACGCACTATTAAAGAATGCTTCCAAATTGGGAGTGAGATTGCATCTGCTGTCACTGCTATGAATCCTAGTCCTGTCACCCTTAAGATTTATTGGAGGTGA 4830 0.411 MADSQCDSKMFSVRIVSIDYYMAPPIPDLDICYSSFHGGKVNEVPVVRIYGSTPAGQKTCLHIHRALPYMYVPCADIPLHLDQEDAYTYKVSASLEKALKLKGGPGLTRQHVHGCSLVRARKFYGYHSSEELFVKIYLYYPQDVSRASNLLLAGAVLDKSLQPYESHIPFILQFLVDYNLYGMGHLHLSKMKFRHPIPDSSHKKLNFNSPQTVADPDGDACLGSAMWTSSIIPADWMWQPASDLGISSNHEAHCPKRQSTCELEGDASVDEILNQQFKMYSSLSQTRSDVQMVQSLVPIWKEQQEKTGIYEATMPSDPGKPLPEIVMKNLSAGLDLEKKFLELCSEAETSASFTPSEKELRETDIIGSASPPASLCKDAILHEEWTDANAADKETLNLLKWLATSQAAEDINSDDELIHETILSPLLSATTIDKVLEKANMDYKSESQKECQDILDSIDDLLELESSKKNLPFSSNVERPIESSSNNMIPQVDGSGDDEISSPHGSSFAVDKKSESKRASEYCILQNTKTSTLDNRNEVWGSLPLSMTHKNVQYASLHVVHPFERETGDSVLIRNEMENSACDIKNEDKGASDLKEVHTLANCSVRDLMRRKRCHRVEQDDCGSGIIRKLLLDRDEKQSSRLWQKQLSLKSLKTDDGDTEVQTNCDLKMSNHDYLVRGKLPLVAGSDSCLQASMLKDENFVLPQMDGLETCAALINSSDGDSSLMSTEVGLHEPKKFDSTCSTYYSEASSGKKLKVGPTYVQSAASDAYAQKFKLFFDDQLLVTDTEHKVRAPDNCQRIDFAAFSSVQRSSIENVVSGEDNCIHKCSHGSKSYEAHGQFKGKSYENAVGMNTANGMQVLQCEKSDEKKPRENLGFCETIDSEPIVNDMVGNHMKFTISRTHAMADGNSESNPFLPAVSNSHLHSDDKSCDEISGNMEMASGSSHLVKALGDVSLFTAGVSQKEIGTWNKHVAISPPNSEGKKVLGVATYYQNDGSHLCLLRPKILPPSVCSVRRWLFCDERDQMFQETEAKDKHLPECSTRTHLSSKQVQDFDSEKMPPCVSVGQIKGVKTCLDSSQDISQISGPDRKSRSTPLSQIGFRDPASIGHGQQLTLLSIEVLAESRGDLLPDPRFDAINIVALGFQNDSDTIIDVHALLHCKLEPCQRNFDGLSGCKVLVFTDEKCLLKKLIKIVSSSDPDILMGWDIQGGSLGFLAERASHLGLGLLNSLSRTPSESWIASEDTGTSEKDILEPVIPDISSADDVQESSIIEDEWGRTHASGVHVGGRIVLNVWRLIRGEVKLNLYSVEAVAEAVLRRKVPSIHYKVNRTSELARIFGIDFFSVLSRGSQYRVESMFLRLAHIQNYLAISPGNQQVASQPAMECLPLVMEPESGFYSDPVVVFDFQSLYPSMIIAYNLCFCTCLGKVVASKANTLGVSSFSPEQHVLQHLKDQILLTPNGVMFVPSKVRRGILPRLLEEILSTRIMVKQAMKKLAPSKQVLQRIFNARQLALKLISNVTYGYTAAGFSGRMPCAELADSIVQCGRCTLEKAISYVNLHDKWNAKVIYGDTDSMFVLLKGRTIKECFQIGSEIASAVTAMNPSPVTLKIYWR 1609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3778 1609 SUPERFAMILY Ribonuclease H-like 27 1344 IPR012337 -
Dere01g3778 1609 Gene3D Palm domain of DNA polymerase 1369 1607 IPR023211 -
Dere01g3778 1609 Pfam DNA polymerase family B 1339 1605 IPR006134 GO:0000166|GO:0003677
Dere01g3778 1609 SMART polmehr3 1128 1577 IPR006172 GO:0000166|GO:0003676|GO:0003887
Dere01g3778 1609 SUPERFAMILY DNA/RNA polymerases 1346 1605 IPR043502 -
Dere01g3778 1609 PRINTS DNA-directed DNA-polymerase family B signature 1563 1571 IPR006172 GO:0000166|GO:0003676|GO:0003887
Dere01g3778 1609 PRINTS DNA-directed DNA-polymerase family B signature 1398 1411 IPR006172 GO:0000166|GO:0003676|GO:0003887
Dere01g3778 1609 PRINTS DNA-directed DNA-polymerase family B signature 1507 1519 IPR006172 GO:0000166|GO:0003676|GO:0003887
Dere01g3778 1609 CDD DNA_polB_zeta_exo 1108 1335 - -
Dere01g3778 1609 PANTHER DNA POLYMERASE ZETA CATALYTIC SUBUNIT 5 1324 IPR030559 GO:0006281|GO:0016035|GO:0019985
Dere01g3778 1609 Gene3D - 1111 1334 IPR036397 GO:0003676
Dere01g3778 1609 Gene3D DNA Polymerase, chain B, domain 1 29 195 - -
Dere01g3778 1609 MobiDBLite consensus disorder prediction 1077 1098 - -
Dere01g3778 1609 Gene3D Helix hairpin bin 1464 1521 - -
Dere01g3778 1609 MobiDBLite consensus disorder prediction 1077 1103 - -
Dere01g3778 1609 MobiDBLite consensus disorder prediction 473 492 - -
Dere01g3778 1609 MobiDBLite consensus disorder prediction 473 513 - -
Dere01g3778 1609 ProSitePatterns DNA polymerase family B signature. 1565 1573 IPR017964 GO:0000166|GO:0003676
Dere01g3778 1609 FunFam DNA polymerase 30 195 - -
Dere01g3778 1609 Pfam DNA polymerase family B, exonuclease domain 1113 1245 IPR006133 -
Dere01g3778 1609 Pfam DNA polymerase family B, exonuclease domain 55 206 IPR006133 -
Dere01g3778 1609 FunFam DNA polymerase zeta 1465 1524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3778 Dere-ChrDere01 51964935 51980015 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3778 39 208 Core DNA Replication Machinery Family AT5G63960 26.286 6.45e-12 68.9