Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3770 ATGTCGAACAACATAAGTGGTGACAGTGGAAGCTTCTCAACAGAGAACGCCGGAGAAGGTGCAGCTAAACAGCCATCGGAGTTACCTGGTCAGTTTCATAGTCCAAATTCTCTCACTTCAACTACAACTAATAGTAATGGTTCCAATACACCTCCACCTCCTAAGAAGAAGAGAAACCTACCAGGAAATCCAGATCCAAGTGCTGAAGTGATAGCTTTATCACCAAACACCCTAATGGCCACAAATCGATTCATATGTGAAATATGCAACAAAGGGTTTCAAAGGGATCAAAACCTCCAACTGCACCGGCGAGGCCACAACCTGCCATGGAAGCTCAAACAAAGAACCACCACAGAAGCTCGAAAGCGGGTCTATGTTTGTCCTGAACCCTCGTGCGTACACCACAACCCAGCTCGAGCACTTGGTGATCTCACTGGCATCAAGAAGCATTTCTGCAGAAAACATGGGGAGAAGAAGTGGAAGTGTGATAAGTGCTCCAAGAAATACGCTGTTCAATCTGACTGGAAAGCCCACTCTAAGATCTGTGGTACAAGGGAATACAAATGTGACTGCGGCACCATCTTTTCCAGAAGAGATAGCTTCATCACCCATAGAGCTTTCTGTGACGCACTGGCCGAGGAGAATAACAAAGCCAGTGAAAGATCAATGCCAATAATGAGTCCGAGCTTGCATGGCCAACAAATCCCGAACCTGGTTTCTTCATTACCCATCAATAGTACCAATATTCCGAACCCACAAATTGGGACTATGGATAATAAGCATCCATTGTCATTGCTTCAGGAGCTCATGCCAATGCCTGCAAATAAAACCTTTAACAACAATATGAGTGCGGGAACCCTATTCGCGGGAAGCCTTTCTTCTAGTTCCACAGTACCACCTCTTCAACTAAGTTCAAACCCACCGAACGTCTTCGAAGAAAATGGGCACCGAATACAACTTCCAGCTGCTTCCTCACCGCTCATGTCTGCCACGGCGCTGCTTCAGAAAGCTGCTCAAATGGGTGCAACTGTGAGTAATAACTCTTGCGTGGCGGAGAAGGGTTTTGTGACAAGTATGGCACCTCCATCATTTGGTCCAAATGGGCATTCCTTCGTGAACCACTATATGCAGAATGAGCAAGAAAACCATATGTCTGGTCAGTATTTGAATGGGAGTGGGGGCGTGGGAATGAACGGTGTGGATATGTTTAACGCCATCTTGGATCAAAGCAAAGCATTCTCCAAGATCATAGAGGAGAATAATCGGAGTAATAGTGGAGTTTTGCATGGTGGGTCAAGTGGGGCTATTAATATTGGTACAACTAAGGGAAGTGGTGATGTGATGACTCTGGACTTCTTGGGGATAGGAGGAGGAGGAGGAGGTGGTGGTGGGCATGGGAGTTTCTATGGCAATCAACACCAACAAGCAGAAAAGGGTGCAATTAGAGATGAAATTTGGAGAAATTGGTCAACCAAGAATGCAGGATTTGAATCATTTTCAGCAACCAGCAGCATCAATTGA 1521 0.4583 MSNNISGDSGSFSTENAGEGAAKQPSELPGQFHSPNSLTSTTTNSNGSNTPPPPKKKRNLPGNPDPSAEVIALSPNTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTTTEARKRVYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTIFSRRDSFITHRAFCDALAEENNKASERSMPIMSPSLHGQQIPNLVSSLPINSTNIPNPQIGTMDNKHPLSLLQELMPMPANKTFNNNMSAGTLFAGSLSSSSTVPPLQLSSNPPNVFEENGHRIQLPAASSPLMSATALLQKAAQMGATVSNNSCVAEKGFVTSMAPPSFGPNGHSFVNHYMQNEQENHMSGQYLNGSGGVGMNGVDMFNAILDQSKAFSKIIEENNRSNSGVLHGGSSGAINIGTTKGSGDVMTLDFLGIGGGGGGGGGHGSFYGNQHQQAEKGAIRDEIWRNWSTKNAGFESFSATSSIN 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3770 506 MobiDBLite consensus disorder prediction 1 69 - -
Dere01g3770 506 Gene3D Classic Zinc Finger 138 218 - -
Dere01g3770 506 MobiDBLite consensus disorder prediction 1 20 - -
Dere01g3770 506 FunFam protein indeterminate-domain 5, chloroplastic-like 138 217 - -
Dere01g3770 506 ProSitePatterns Zinc finger C2H2 type domain signature. 86 106 IPR013087 -
Dere01g3770 506 Pfam Zinc-finger double-stranded RNA-binding 84 106 IPR022755 -
Dere01g3770 506 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 40 472 IPR031140 -
Dere01g3770 506 SMART c2h2final6 160 180 IPR013087 -
Dere01g3770 506 SMART c2h2final6 125 155 IPR013087 -
Dere01g3770 506 SMART c2h2final6 84 106 IPR013087 -
Dere01g3770 506 Gene3D Classic Zinc Finger 63 130 - -
Dere01g3770 506 SUPERFAMILY beta-beta-alpha zinc fingers 83 180 IPR036236 -
Dere01g3770 506 MobiDBLite consensus disorder prediction 29 53 - -
Dere01g3770 506 FunFam protein indeterminate-domain 12-like 63 131 - -
Dere01g3770 506 ProSiteProfiles Zinc finger C2H2 type domain profile. 84 106 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3770 Dere-ChrDere01 51875846 51878544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3770 40 360 IDZ Gene Family AT3G50700 54.885 2.17e-119 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere01g3770 zf-C2H2_jaz 7.4e-05 CL0361