Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3749 ATGAGTAGACGGTCAAGTCGCACTATTTATGTTGGCAATCTGCCTGGTGATATTCGCTTGAGAGAAGTGGAGGATCTTTTTTACAAGTATGGTCCAATTGTTGACATTGATTTAAAAATCCCTCCAAGACCACCAGGTTATGCTTTTGTTGAGTTTGAAGATCCTCGTGATGCTGAGGATGCAATCCGTTATCGTGATGGTTATAATTTTGATGGTTTTCGTTTACGAGTTGAACTTGCACATGGTGGGCGGGGATCTTCATCATCAGTAGACCGTTATAGTGGTTATAGTGGTAGTGGTGGTAGTCGCGGAGTTTCTAGGCGTTCTGACTATCGTGTTATGGTCACTGGATTACCTCCTTCGGCTTCTTGGCAAGATTTGAAGGATCACATGCGTAAAGCTGGTGATGTATGTTTCTCTCAAGTCTTCCGCGAACGTGGTGGCATGACTGGGATAGTGGATTATACTAATTATGATGATATGAAATATGCTGTCAGGAAACTTGATGACTCAGAATTCCGTAATGCCTTCTCTCATGCATATATTAGGGTGAGGGAATATGATCGACAAAGTTATTCTAGGAGTCCTAGCCGTGATTCAAGGAGGAGTTATTCCAGAAGTCGAAGCCATAGTCCTTATATGTCACGAAGTCAAAGTCGAAGTCGTAGCTACAGTGACAGGAGCCGGAGCTTGTCTCCAAAGACAAAACATTCACGGCGATCTTTATCAAGGATCTTGAAACCCAGTGCAATTCGAGCTTTGCTATCATCTGGTTACCCCTCTCCCCTTAAGGACAGACAGAGACTAAAGCGTTATGAGAAATCAGGGTCTTACTCTATCAATAGCATAAATGGTGTCTGCCTGTCTTTCAGTCGGAAGTTGAGGAGACATTTCATTTCCTTGTAA 906 0.4305 MSRRSSRTIYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDAEDAIRYRDGYNFDGFRLRVELAHGGRGSSSSVDRYSGYSGSGGSRGVSRRSDYRVMVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYAVRKLDDSEFRNAFSHAYIRVREYDRQSYSRSPSRDSRRSYSRSRSHSPYMSRSQSRSRSYSDRSRSLSPKTKHSRRSLSRILKPSAIRALLSSGYPSPLKDRQRLKRYEKSGSYSINSINGVCLSFSRKLRRHFISL 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3749 301 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 5 241 - -
Dere01g3749 301 CDD RRM2_SF2_plant_like 111 186 - -
Dere01g3749 301 MobiDBLite consensus disorder prediction 82 104 - -
Dere01g3749 301 SMART rrm1_1 8 78 IPR000504 GO:0003723
Dere01g3749 301 SMART rrm1_1 112 183 IPR000504 GO:0003723
Dere01g3749 301 FunFam ASF/SF2-like pre-mRNA splicing factor SRP31 1 110 - -
Dere01g3749 301 MobiDBLite consensus disorder prediction 87 104 - -
Dere01g3749 301 SUPERFAMILY RNA-binding domain, RBD 5 177 IPR035979 GO:0003676
Dere01g3749 301 Gene3D - 111 188 IPR012677 -
Dere01g3749 301 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 189 IPR000504 GO:0003723
Dere01g3749 301 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Dere01g3749 301 MobiDBLite consensus disorder prediction 188 206 - -
Dere01g3749 301 Gene3D - 2 110 IPR012677 -
Dere01g3749 301 MobiDBLite consensus disorder prediction 188 243 - -
Dere01g3749 301 FunFam serine/arginine-rich splicing factor SR34A-like 111 188 - -
Dere01g3749 301 CDD RRM1_SF2_plant_like 8 79 - -
Dere01g3749 301 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Dere01g3749 301 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 175 IPR000504 GO:0003723
Dere01g3749 301 MobiDBLite consensus disorder prediction 207 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3749 Dere-ChrDere01 51687479 51690902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3749 3 80 Eukaryotic Initiation Factors Gene Family AT3G11400 32.099 6.58e-06 45.1