Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3730 ATGAGATTCTGTATTAACTTGCCCGTGGAGCCTGTTGTGGTCGGATTAAAACGGTCAAATTATATTTGCTTTTCCCGGAACAAATGCTGCTTCACGACTAATTTGAGTTCATTTCGGGATGACAGTTTATTTTATTTCTCTTATTTGGGAGCATCACATGATTACGCACCCCCTATTCATCAACCATATCATAAGCCAAACCTCCACAACCATCCCAATCACTCCCTCACCATGGCCATAGACTTGAAGCTATCAACTTCCTTATACACCACGTTTACCCTTTTCATACTTCTCTCTTCTCCCTCTCTTGCAGCCTTCTCCTTCTCCCCAGATAGCTCATGCGACCTTACTTCCTATCCATCATTCTGCAGAACCACTCTACCTCCTCTTTATTCTGGATCCATCACTGACCATGCCCTCTTCTTCCTTCACCAATCCTTATTATCCACAAACACATTTCTTAAATTAATCTCTTCTTACCTTAGCCAGCAGTCCATGCTTCCTGTTTCGACACTACGCGCCCTTCAAGATTGTCAGAACTTAGTTGAACTGAACAATGACTTTTTGTCCTATTCCCTCCAAACTGTCCAGAATACACTGAATCTCCCTCAAGCTTATGATTTGCATGCCTTGCTTAGTGCCGTTTTGACCAACCATCAAACATGCCTCGATGGTTTTAATGAGGTAACTCCTTATCCTACAATTACCAGCGGGTTATTGAGCCCTCTTTCTGATGGGACAAAGCTTTATAGCATATCTCTGGCCTTCTTCACGCGTGGCTGGCTTTCCGATACCACTGGAAGATTATTGAGGGAAAGGAAGGGAATTGAGACAAACATGAATAGAAAGTTACTTCAGAAAAAGATTGACACTTTGGAGGTGAGAGAGAAGGTGGTGGTGAACCCAGATGGATCTGGGGATTTCACCACCATCAATGATGCAGTCATGGCTGCACCAAATAATACCGGCACCAACAACGGCTACTATGTAATTTATGTGGTTGCTGGAGTTTATAATGAGTACGTCTCTATTGCTAAGAACAAGCAAAACTTGATGATCGTTGGCGATGGCACTAATCAGACTATCATCACCGGCAATCGCAGCGTGGTTGATGGCTGGACCACCTTCCAATCCGCTACTTTTGAAGCTGCACAGAGAATGAAAAGACTCGCCATAATTGGCGTGTCTAGTTTCTTACTGGTGGCCATGGCGGTGGCCGTCACTGTAGGTGTCAGCATGAATCAGAACGATTCTGAACCAAGCCAGCCAAAGGATAATAACAAGTCCCACGTCTCCGATTCAATGAAAGCCGTGACAGACCTATGCCGTCCCACTGATTACAGACAAGAGTGCGAAAACAGCCTTAAATCCGAGGCCGACGGCATCACCGACCCTAGAGAACTCATCAAGATCGTCTTCAACATGACCATTCGCTCTGTAGGGGAAAGTCTCCAGAAAACTCGTCTAATAAAAGACGTGGAGAAAGAGCCTAGATCCAAGATGGCACTTGACACATGCATGCACCTCATGGGTCTCTCCATTGAGGAGCTCCGAAAGTCTGTAGAGAACATGGGTTCATTTGATCTCACCAACGTAGATGACATGCTCATGAACCTCAAGGTTTGGATTAGCGGTGCCATCACCTACCAACAGACTTGTTTGGACGAGTTTGAGAATACCACCAGCCAAGCTGGGCAACAGATGCAGGATGTATTGAAACTCACGATGCAAAAGAGCAGCAATATTCTTGCCATCATTAACGATTTCGCCAACAGTTTGGCTCAACTGAACATAACAGGCCCCACCTCACGTCGACTCCTTCTAAATACTGAAGCCGATCCTGTTTTGGGTCACGGAGACCTCGACATTCCCTTCTGGGCTCAAGCTGGTTTCAGGAGACTTCTTGCCAAGGGCAAGCTCAGGCCCCATGTGGTTGTAGCCCAAGATGGGTCTGGAAAGGTCAGAACCATTAACGAGGCCTTGAGGCTGATCCCCCGCAATAACGTGAAGCCATTCATCATCTACGTCAAAAAGGGAATCTACCAGGAGTATGTTCATATTAAGAAGAACATGTCCCGAGTCGTTATGATCGGTGATGGTCCCGAAAAGACCCGAATCACTGGAAACAGAAACTTTGTCGATGGCATCGGTACCTATAGAACCGCTACCGTTGCTGTTGAAGGAGATTTCTTTTTCGGGATAAAGATAGGGTTTGAGAACTCAGCTGGTGCCATAAAGCATCAAGCTGTAGCCCTAAGGGTGCAGGCTGATATGTCAGTGTTCTACAAATGCCACATGGATGGGTTCCAGGATACACTATATGTTCACGCATTGCGTCAATTCTACAGAGACTGCACTATTTCAGGTACCATAGACTTCGTTTTCGGCGATGCAGTTGCAATATTCCAGAATTGCATATTCGTGGTTCGGAAGCCATTGGAAAATCAGCAATGTATCGTGACGGCACAGGGCAGGAAGGAGAGACACCAACCGACAGGAATAGTCATCCAAGGAGGGTCTATCGTGGCAGACCGTGAGTTCTACCCAGATAGGTTCAAGAACAAAGTATACTTGGCTCGTCCATGGAAGATCTATTCCAGAACCATATTCATGGACACCTTCCTGGATGACTTGATCCAACCCGAAGGGTATCTGCCGTGGGAGGGCACATTGGGGCTGGACACGCTTTACTACGCAGAGTTCAACAATAGAGGCCCTGGTTCTGATAAATCAAAGCGTGCTAAATGGGGCGGTATCAAGAACATCACATCCCAAGAAGCCGACACTTACACGCCCATGAACTTCTTTAGGGGAGACAGGTGGATTAAGATTACCCACATTCCTTACACCCCTGGCAAGTGGAAGCCTAAGCACTAA 2877 0.463 MRFCINLPVEPVVVGLKRSNYICFSRNKCCFTTNLSSFRDDSLFYFSYLGASHDYAPPIHQPYHKPNLHNHPNHSLTMAIDLKLSTSLYTTFTLFILLSSPSLAAFSFSPDSSCDLTSYPSFCRTTLPPLYSGSITDHALFFLHQSLLSTNTFLKLISSYLSQQSMLPVSTLRALQDCQNLVELNNDFLSYSLQTVQNTLNLPQAYDLHALLSAVLTNHQTCLDGFNEVTPYPTITSGLLSPLSDGTKLYSISLAFFTRGWLSDTTGRLLRERKGIETNMNRKLLQKKIDTLEVREKVVVNPDGSGDFTTINDAVMAAPNNTGTNNGYYVIYVVAGVYNEYVSIAKNKQNLMIVGDGTNQTIITGNRSVVDGWTTFQSATFEAAQRMKRLAIIGVSSFLLVAMAVAVTVGVSMNQNDSEPSQPKDNNKSHVSDSMKAVTDLCRPTDYRQECENSLKSEADGITDPRELIKIVFNMTIRSVGESLQKTRLIKDVEKEPRSKMALDTCMHLMGLSIEELRKSVENMGSFDLTNVDDMLMNLKVWISGAITYQQTCLDEFENTTSQAGQQMQDVLKLTMQKSSNILAIINDFANSLAQLNITGPTSRRLLLNTEADPVLGHGDLDIPFWAQAGFRRLLAKGKLRPHVVVAQDGSGKVRTINEALRLIPRNNVKPFIIYVKKGIYQEYVHIKKNMSRVVMIGDGPEKTRITGNRNFVDGIGTYRTATVAVEGDFFFGIKIGFENSAGAIKHQAVALRVQADMSVFYKCHMDGFQDTLYVHALRQFYRDCTISGTIDFVFGDAVAIFQNCIFVVRKPLENQQCIVTAQGRKERHQPTGIVIQGGSIVADREFYPDRFKNKVYLARPWKIYSRTIFMDTFLDDLIQPEGYLPWEGTLGLDTLYYAEFNNRGPGSDKSKRAKWGGIKNITSQEADTYTPMNFFRGDRWIKITHIPYTPGKWKPKH 958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3730 958 FunFam Pectinesterase 434 590 - -
Dere01g3730 958 SUPERFAMILY Pectin lyase-like 642 951 IPR011050 -
Dere01g3730 958 Pfam Pectinesterase 643 939 IPR000070 GO:0030599|GO:0042545
Dere01g3730 958 Pfam Pectinesterase 298 384 IPR000070 GO:0030599|GO:0042545
Dere01g3730 958 CDD PMEI-like_3 441 591 - -
Dere01g3730 958 ProSitePatterns Pectinesterase signature 1. 668 687 IPR018040 -
Dere01g3730 958 Gene3D - 637 953 IPR012334 -
Dere01g3730 958 Gene3D - 291 415 IPR012334 -
Dere01g3730 958 NCBIfam pectinesterase inhibitor domain 432 587 IPR006501 GO:0004857
Dere01g3730 958 NCBIfam pectinesterase inhibitor domain 87 235 IPR006501 GO:0004857
Dere01g3730 958 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 111 259 IPR035513 -
Dere01g3730 958 SUPERFAMILY Pectin lyase-like 297 383 IPR011050 -
Dere01g3730 958 CDD PMEI-like_3 112 261 - -
Dere01g3730 958 ProSitePatterns Pectinesterase signature 2. 787 796 IPR033131 -
Dere01g3730 958 Pfam Plant invertase/pectin methylesterase inhibitor 111 255 IPR006501 GO:0004857
Dere01g3730 958 Pfam Plant invertase/pectin methylesterase inhibitor 437 585 IPR006501 GO:0004857
Dere01g3730 958 FunFam Pectinesterase 637 953 - -
Dere01g3730 958 Gene3D Invertase/pectin methylesterase inhibitor family protein 433 589 IPR035513 -
Dere01g3730 958 PANTHER PECTINESTERASE 397 945 - -
Dere01g3730 958 SMART PMEI_2 105 256 IPR006501 GO:0004857
Dere01g3730 958 SMART PMEI_2 433 585 IPR006501 GO:0004857
Dere01g3730 958 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 436 589 IPR035513 -
Dere01g3730 958 MobiDBLite consensus disorder prediction 414 435 - -
Dere01g3730 958 Gene3D Invertase/pectin methylesterase inhibitor family protein 111 259 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3730 Dere-ChrDere01 51503600 51510209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3730 382 952 Carbohydrate Esterase AT3G05610 46.783 0.0 591