Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3724 ATGTCAACGGAGCGGCTGATTGAACGGTCGGATGCAATGTCAGGACTATTATCGACTTCGCAGTCGTTGAGGCAATGCGCCGAACCTAATTGGATATTTGAAGAATTGCCAAAGGCCACCATTGTTTCCGTTTCCCGACCAGACACCGGAGATATTAGCCCAATCCTTCTGTCTTATACCATTGAGTTCCAGTACAAACAGGCACTCTCTCTCTCTCTCTCTCTCTCCCTCCGTGCATTACTCTGTTTCTGTTTGCTTATCTGTTTTTCCATAAATCAAATCTGTGCTTCCTGGTTCAAGTGGCGCTTACTGAAGAAAGCATCACAAGTTCTCTATTTACATTTCGCTTTGAAAAAACGTGCAATAATTGAAGAATTTCAGGACAAGCAAGAACAGGTAAAAGAATGGCTACAAAGCTTAGGAATAGTAGATCAAACAGCGATGGTGCAAGATACTGAAGAACCTGATGACGGAACTGTGCCTTTACATAATGAAGACAGTCTTAAGAACAGATATGTTCCGTCCACTGCAGCCCTACCAATCATTCGTCCATCACTTGGAGGGCAGCAGTCAGTTGCAGATAAAGCTAAAGTGGCAATGCAGGGTTACTTGAATCATTTTCTAGGAAACATGGATATTGTCAATTCTCGAGAGGTCTGCAAGTTCTTAGAGGTCTCCAGCTTATCCTTTTTACAGGAGTATGGGCCAAAACTGAAAGAGGGCTATGTAATGGTTAAGCATTTATCAAATATCGCAAGGGATTCAGATATAACATGCTTGCCATGCGAATGGTTTCGTTGTTGTAATAACAACTGGCACAAGGTATGGGCTGTTCTGAAACCTGGCTTCTTGGCCTTGCTGGATGACCCTTTTGACAACAAACCAGCAGACATAATTGTTTTTGATGTCCTCCCATTCTCGAATAAAGATAAGGGGTCCCCTATATACTTGGCCGATCATGTAAAGGAACGCAATCCTTTAAGATATACATTCAAGGTAACCAGTGGAAATCAGAGCTTAAGGTTGCGCACTAGCAGCAGTGCTAAAGTTAAAGATTGGGTTACTAAAATTAACGAAGCTGGTCTTGGACCTCAAGAGGGTTGGTGTCATCCTCATCGCTTTGGTTCATTTGCTCCCTTAAGAGGTTTGACTGAAGATGGGAGCCAAGCCCAATGGTTTATAGATGGGAAGGCAGCATTTGAAGCCATTGCTTCTTCAATTCAGGAAGCAAAGTCAGAGGTCCTCATCACTGGATGGTGGCTTTGCCCAGAGCTCTATCTGAAACGTCCTTTTCACTCACATTCTTCCTTTAGGCTGGAAACATTACTAGAAGAAAAAGCTAAACAAGGAGTTCAGATATATGTGCTTCTGTACAAGGAGGTTTCTCTGGCTTTAAAAATTAACAGCTTGTACAGTAAGAGAAGACTCCGTAACATTCATGAGAATGTGAGGGTATTGCGCTATCCCAACCATTTATCAACTGGTGTCTATTTATGGTCACACCATGAAAAACTTGTGATCGTAGATTACAAGATTTGCTACTTGGGTGGATTGGATTTATGCTTTGGCCGTTATGACACAACTGAACATAAAGTGGGTGATCTCATCTCTGAACTATGGCCTGGAAAGGACTATTACAACCCAAGAGAATCTGAACCTAATTCTTGGGAAGACACCATGAGAGATGAATTGGATCGTGAAATGTATCCCCGCATGCCATGGCACGATGTCCATTGTGCCATTTGGGGACCTCCCTGTCGTGACATTGCTCGACACTTTGTTCAACGGTGGAACCATGCAAAGAGAACCAAAGCTCCAAATGAACATACCATTCCCCTACTTATGCCTCACCACCACATGGTCATCCCTCATTACATGGGAAGAAGCCAAGAGATAGGCATTGACGGAAGCAAAGAAGAAGACAACCCAAAAGAAATTGACAGTCAGAATTCCTCTTTGTCGCAATCACCCCCGCGAGATATACCACTGCTTCTACCTCAAGAAGCCAGTGGGGAAGATCTTAAGTTAATAGGAAACAATATGAATGATAATCTTATTGATCAAACAAATTGTTGTGTAAACCAAAGACCAAGCGATGAAACTTCTGAATCAGATGCTCAAATGAAAGGTCTTCTAGATGCATTTGATCATTTTAACTTGGAGACACAATCTGCCGTTGATGCTACAGATGATTGGTGGGGATCACCTGAAGGAGATTACTGCGATGCCACTGCCAAGGAATATGAAGAAGTTGGTCCGCAAACTACTTGTCGCTGTCAGGTAATCCGGAGTGTCAGCCATTGGTCTGCTGGAACAAGTCAGACTGAAGAGAGCATTCACACTGCTTATTGTTCTCTTATTGAAAAAGCAGAACATTTTATCTACATTGAGAACCAATTTTTCATTTCAGGCCTGACAACAGATGATATTATACAGAACCGTGTATTGGAAGCATTATATAGGCGTATTTTACTGGCTCACAAAGAGCAAAAGCTTTTCAGAGTTATAATTGTGATGCCTCTATTGCCTGGCTTCCAGGGTGGTCTGGATGACGGTGGTGCAGCAACTGTAAGAGCCATAACACATTGGCAGTATCGAACAATCTCTAGACAAAAGCATTCCATATTAGCCAACCTTAAAGCTTTGCTTGGCCCCAAGACTGATAATTACATTTCTTTCTACGGTCTACGATCTCATGGCAGACTTTTTGCTGGTGGCCCTATGGTTACAAGTCAGGTATATGTACACAGCAAATTGATGATCATAGATGACCGTGCTGCTATAATTGGATCTTCTAACATAAATGATAGGAGTTTGCTTGGCTCAAGAGACTCTGAGATTGGAGTGGTGATCCAAGACAAAGAATATGTGGAATCATTTATGAATGGAAAGCCATGGAAGGCTGGGAAATTTTCCTATAGCCTGCGTTGCTCCCTATGGTCTGAGCACCTAGGTCTGCATGCTGGAGAGGTTAGTAAAATCAATGATCCAATAGCAGATACAACTTACAGGGACTTATGGTCAGCAACTGCTAAGGAAAATACAAGAATATACCATGAGGTTTTTGCTTGCATACCCAATGATCACGTACGCTCCAGAGCTGCACTTCGGCAAAACATGGCTCATTGGAAGGAGAAACTAGGTCATACCACCATAGACTTGGGAGTAGCACCTGAGCAAACAGAGTTCGCAGATAAATTAAAGTGTGTAAAGGGACACCTTGTTTCTTTTCCTTTGGAATTCATGCGTGATGAAGATTTAAGACCAGTTTTCAATGAGAGTGAGTTTTATGTATCTCCTCAAGTCGGCCAAGAGGACATGAAGACAGCAAATTGGTATGGCTGTTAG 3348 0.425 MSTERLIERSDAMSGLLSTSQSLRQCAEPNWIFEELPKATIVSVSRPDTGDISPILLSYTIEFQYKQALSLSLSLSLRALLCFCLLICFSINQICASWFKWRLLKKASQVLYLHFALKKRAIIEEFQDKQEQVKEWLQSLGIVDQTAMVQDTEEPDDGTVPLHNEDSLKNRYVPSTAALPIIRPSLGGQQSVADKAKVAMQGYLNHFLGNMDIVNSREVCKFLEVSSLSFLQEYGPKLKEGYVMVKHLSNIARDSDITCLPCEWFRCCNNNWHKVWAVLKPGFLALLDDPFDNKPADIIVFDVLPFSNKDKGSPIYLADHVKERNPLRYTFKVTSGNQSLRLRTSSSAKVKDWVTKINEAGLGPQEGWCHPHRFGSFAPLRGLTEDGSQAQWFIDGKAAFEAIASSIQEAKSEVLITGWWLCPELYLKRPFHSHSSFRLETLLEEKAKQGVQIYVLLYKEVSLALKINSLYSKRRLRNIHENVRVLRYPNHLSTGVYLWSHHEKLVIVDYKICYLGGLDLCFGRYDTTEHKVGDLISELWPGKDYYNPRESEPNSWEDTMRDELDREMYPRMPWHDVHCAIWGPPCRDIARHFVQRWNHAKRTKAPNEHTIPLLMPHHHMVIPHYMGRSQEIGIDGSKEEDNPKEIDSQNSSLSQSPPRDIPLLLPQEASGEDLKLIGNNMNDNLIDQTNCCVNQRPSDETSESDAQMKGLLDAFDHFNLETQSAVDATDDWWGSPEGDYCDATAKEYEEVGPQTTCRCQVIRSVSHWSAGTSQTEESIHTAYCSLIEKAEHFIYIENQFFISGLTTDDIIQNRVLEALYRRILLAHKEQKLFRVIIVMPLLPGFQGGLDDGGAATVRAITHWQYRTISRQKHSILANLKALLGPKTDNYISFYGLRSHGRLFAGGPMVTSQVYVHSKLMIIDDRAAIIGSSNINDRSLLGSRDSEIGVVIQDKEYVESFMNGKPWKAGKFSYSLRCSLWSEHLGLHAGEVSKINDPIADTTYRDLWSATAKENTRIYHEVFACIPNDHVRSRAALRQNMAHWKEKLGHTTIDLGVAPEQTEFADKLKCVKGHLVSFPLEFMRDEDLRPVFNESEFYVSPQVGQEDMKTANWYGC 1115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3724 1115 CDD PLDc_vPLD1_2_yPLD_like_2 771 955 - -
Dere01g3724 1115 CDD PH_PLD 214 360 - -
Dere01g3724 1115 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 497 524 IPR001736 GO:0003824
Dere01g3724 1115 Gene3D - 237 362 IPR011993 -
Dere01g3724 1115 Pfam Phospholipase D Active site motif 497 524 IPR001736 GO:0003824
Dere01g3724 1115 SUPERFAMILY Phospholipase D/nuclease 357 617 - -
Dere01g3724 1115 SUPERFAMILY PH domain-like 231 360 - -
Dere01g3724 1115 PANTHER PHOSPHOLIPASE D 193 1091 IPR015679 -
Dere01g3724 1115 PIRSF PLD_euk 687 1103 IPR016555 GO:0004630|GO:0006654|GO:0048017
Dere01g3724 1115 PIRSF PLD_euk 2 652 IPR016555 GO:0004630|GO:0006654|GO:0048017
Dere01g3724 1115 Gene3D Endonuclease Chain A 734 974 - -
Dere01g3724 1115 FunFam Phospholipase 745 965 - -
Dere01g3724 1115 Pfam PLD-like domain 784 960 IPR025202 -
Dere01g3724 1115 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 911 938 IPR001736 GO:0003824
Dere01g3724 1115 SMART pld_4 911 938 IPR001736 GO:0003824
Dere01g3724 1115 SMART pld_4 497 524 IPR001736 GO:0003824
Dere01g3724 1115 SMART PH_update 237 364 IPR001849 -
Dere01g3724 1115 MobiDBLite consensus disorder prediction 633 664 - -
Dere01g3724 1115 Gene3D Endonuclease Chain A 384 619 - -
Dere01g3724 1115 ProSiteProfiles PH domain profile. 236 362 IPR001849 -
Dere01g3724 1115 SUPERFAMILY Phospholipase D/nuclease 748 961 - -
Dere01g3724 1115 CDD PLDc_vPLD1_2_yPLD_like_1 390 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3724 Dere-ChrDere01 51461259 51469327 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3724 32 1102 Phospholipase D Gene Family (Wang group) AT3G05630 64.679 0.0 1405