Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3711 ATGAGAAAGACGATAAGGCGTTGGAACATTTTCTTGATATTGCAAAACAAATTCATCGTTTCTGGTGATTTTGTTCCTCCTCTCGCAGGTACTAAATCTGTTCTTTCTTCGTCTCCTTCTCTCTCTTTTTCTGCTGCTTGTTCCGTTCAAAAGATTCCCACTTCAACTCTATATTACCTCAGATCCGTGATAGAAATAACTTGTAGAATGGTACTAATTCCATATCAGATGGTTAGGGGAGGAAAGGTTAGTAGTAAACGCAATCTCAGAAAAAGGGTTCGGTCAAAGGAAGGGCGTTCTGATGATTCAGATGAGGACTATGTGGTTCCAGATGAAGGTACAGATGTGTCTTATTGTTCAGGGGAATCTTTCTCTTCTTTAGATGGATGTGCATCCGAGGAGAGTTTTGATAGCTTTATGGAGGATGAAGAGGATGAGGAGGTGGAAATTAAAGTAGGTAGGACTTTCAATAGATCCAAGACCAAAAATGGTTTCTGTGGTCGGCAGAAAATCGGGAGAAAACCCTCACAACAAAGGGGAAGGGTTACATATGTACAACAATCAGAAGAAGACAAAGAAGAAGTAGTAGAAGAAGAAGAACTACGAGAAGCGGAAGAGGTAGATGAATATGAGGAAGAGGATGCTGATGAGGATTTTGATTTCGATGATGATGAGGAATTTACACCTGAGGAAGAAGATTATTCAGATGAGGATGAAGAACTGAAGGGGAGAAAGAAGAAAAGTAATGGCATAAAAATGGGCAAGAAGGTTGTGAAGAAGCGGGCTTCTGTGGCTTCTACTAGAAGTCGTAAGAGAAGGAAGAATTCTAGGGCTGCAAGGAAGCCCTTACGAAAGAAGAGAAGAAAGAATGAAGGGTTGAGGAGGAAAGTAAAATGTGATGATGAGTGTGATTTTATAGATAATGGCCCAACCATCAGAACCAAGAGTAAGAAAAAATCAGGCCGAAAAAGGAGAAGACTTCTTACTGATTCAGATTCATACTCAGATTGTGAGTCATCTGGATTATCCGATTATGAGTATACCATCTCTGAAGAAGAGAGAGAACAGGTGAGAGAAGCTGAGGAATTGTGTGGAAGTTTGAGAAGTAATTTGAGGAGTTCATCCCTTCTGACAAAAAATGAAGAAAATAGAGTCCATGAAGATCTACATCAGCAAAGGAAGCCTCCAGGCCGGAAGGGTAAGGAGAAGATAGAGGAACATCAAGGGAGAAAGGGTAAGGACAAGGTGGAGGATTTAAAAAGTGAACCAGGAAAGCAGATGTGTGGAATTTGTCTCTCTGAAGAAGATAAAAGAAGAGTAAGGGGAGTATTAGATTGTTGCACACACTTCTTTTGTTTTGCTTGCATTATGGAGTGGGCAAAGGTGGAATCTCGCTGCCCTTTGTGCAAGCAGAGATTTAAAACAATCAGTAAGCCTGCACGATCGACAACAGCAGGGGTTGATTTGAGAGGATCAGTGATACAAGTCCCTGAACGTGATCAGGTTTACCAGCCCTCTGAAGAAGAACTCAGGAGCTATATTGATCCTTATGAGTATGTAATTTGTTCAGAGTGCCATCAAGGTGGAGATGATGGCCTAATGTTACTGTGTGATCTCTGTGACTCACCTGCACACACATATTGTGTTGGTCTGGGTAGGGAAGTACCTGAAGGCAACTGGTATTGTGATGGTTGTAGACCAGTTGCTTTGGGATCTTCAAGTTCTCAAGTTCAAGAAGGTGTGGCTGATCCAAGGTTGACAATTCAGAGCCTGCCTGGTAGACCATCACCTGCGGTACATGCACGAGAAAGTATAGACCTCAACTTGATGTCTTCACCCCGTGCATCTTTTAGTCAAGGATTTGGGAATATTTCTTCTAGATTTTCTGGCAGAAGTGTTGAAGGAGCTTCTCCAGTATCTGGAGGAGGGGCACCAACTTTGTCAGAGAGACGTTGGATACACCGTCAAATTCAACAATTACTTTCAATGGATAGAATGGCTTCTGCAACTGGCAGATCTAATGGCAGTTCAGCTACCAATTCAGTTAGTAACCCCTATAACTCTCAAATTGATCCGAGTAGGGAAACAACTACTCAAGATACTAGGACACAGGATGTCGGAACTTCATATCACACATTCTTTGAGGAGAGATTATGCAACAATACCTCTCCTCTAATGCAGAACGGGGATATCTTCTCCATGAGAATAAGCAATTCAAGGAGGCCAGGGGTTCAAGATTCAACACCATTTACCAACAGAGCTGCGAATGGGGCATTGTGGCCTGGCCTTGTGGGGACACCCCCTGTATCAGATTATGATCAAGTCCATCAGCTCAGCAGCAGTTCCCACATTGTTCACGATGGTAGCGTGTACCCTGCTATTAGAGAAGAGAGTAACTTTCACATAGCAAAGGAACAATTATCGTCAATGGTTAAAGGCCACCTGGTGAGCTTGTCACATAATATTGATTTAGGCAACAGCACTATCAAGGACATCTCAAGGATTTCTTTAAACACCATACTGGCAGCTTGTGGTCTTGAGCACAAGAAGAGTGAGGTTTGCGCTGTGCCCCCTCCATCAGCCTGTCCCCACATTGAACTAATGGCTGGTGGGCAAACTAGTCTGATTAAAGGGTGCTGCTCATCTTGCTTTGATTCTTTTGTAGGAGATGTGGTGAAGAGGATCATGGACACAAGAATGTCACAGTGGTTACGATTAGGTCTTTAG 2727 0.4279 MRKTIRRWNIFLILQNKFIVSGDFVPPLAGTKSVLSSSPSLSFSAACSVQKIPTSTLYYLRSVIEITCRMVLIPYQMVRGGKVSSKRNLRKRVRSKEGRSDDSDEDYVVPDEGTDVSYCSGESFSSLDGCASEESFDSFMEDEEDEEVEIKVGRTFNRSKTKNGFCGRQKIGRKPSQQRGRVTYVQQSEEDKEEVVEEEELREAEEVDEYEEEDADEDFDFDDDEEFTPEEEDYSDEDEELKGRKKKSNGIKMGKKVVKKRASVASTRSRKRRKNSRAARKPLRKKRRKNEGLRRKVKCDDECDFIDNGPTIRTKSKKKSGRKRRRLLTDSDSYSDCESSGLSDYEYTISEEEREQVREAEELCGSLRSNLRSSSLLTKNEENRVHEDLHQQRKPPGRKGKEKIEEHQGRKGKDKVEDLKSEPGKQMCGICLSEEDKRRVRGVLDCCTHFFCFACIMEWAKVESRCPLCKQRFKTISKPARSTTAGVDLRGSVIQVPERDQVYQPSEEELRSYIDPYEYVICSECHQGGDDGLMLLCDLCDSPAHTYCVGLGREVPEGNWYCDGCRPVALGSSSSQVQEGVADPRLTIQSLPGRPSPAVHARESIDLNLMSSPRASFSQGFGNISSRFSGRSVEGASPVSGGGAPTLSERRWIHRQIQQLLSMDRMASATGRSNGSSATNSVSNPYNSQIDPSRETTTQDTRTQDVGTSYHTFFEERLCNNTSPLMQNGDIFSMRISNSRRPGVQDSTPFTNRAANGALWPGLVGTPPVSDYDQVHQLSSSSHIVHDGSVYPAIREESNFHIAKEQLSSMVKGHLVSLSHNIDLGNSTIKDISRISLNTILAACGLEHKKSEVCAVPPPSACPHIELMAGGQTSLIKGCCSSCFDSFVGDVVKRIMDTRMSQWLRLGL 908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3711 908 ProSiteProfiles Zinc finger PHD-type profile. 519 568 IPR019787 -
Dere01g3711 908 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 404 488 IPR013083 -
Dere01g3711 908 MobiDBLite consensus disorder prediction 248 293 - -
Dere01g3711 908 MobiDBLite consensus disorder prediction 375 418 - -
Dere01g3711 908 Coils Coil 350 370 - -
Dere01g3711 908 Pfam PHD-finger 521 567 IPR019787 -
Dere01g3711 908 SUPERFAMILY FYVE/PHD zinc finger 491 567 IPR011011 -
Dere01g3711 908 SMART PHD_3 521 566 IPR001965 -
Dere01g3711 908 SUPERFAMILY RING/U-box 427 476 - -
Dere01g3711 908 MobiDBLite consensus disorder prediction 294 314 - -
Dere01g3711 908 CDD RING-HC_Topors 426 473 - -
Dere01g3711 908 Pfam Ring finger domain 427 470 IPR001841 -
Dere01g3711 908 ProSitePatterns Zinc finger RING-type signature. 447 456 IPR017907 -
Dere01g3711 908 ProSiteProfiles Zinc finger RING-type profile. 428 470 IPR001841 -
Dere01g3711 908 MobiDBLite consensus disorder prediction 629 650 - -
Dere01g3711 908 MobiDBLite consensus disorder prediction 191 237 - -
Dere01g3711 908 SMART ring_2 428 469 IPR001841 -
Dere01g3711 908 MobiDBLite consensus disorder prediction 668 704 - -
Dere01g3711 908 MobiDBLite consensus disorder prediction 86 111 - -
Dere01g3711 908 Coils Coil 193 213 - -
Dere01g3711 908 PANTHER F18C1.6 PROTEIN 77 899 - -
Dere01g3711 908 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 494 569 IPR013083 -
Dere01g3711 908 MobiDBLite consensus disorder prediction 163 349 - -
Dere01g3711 908 MobiDBLite consensus disorder prediction 379 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3711 Dere-ChrDere01 51351973 51356563 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3711 516 565 C2H2 Transcription Factor Family AT3G01460 46.154 3.98e-08 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Dere01g3711 PHD 3.3e-09 CL0390