Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3707 ATGTGCTCCCCTCATGCGGCTTGCTGGTGCGCTTTATCTAGCTACGTAGAGCAACATTCTCGTTTCGGTGATTCGGAAATGTCGTATGAGGAATTGACTAATAACAAGAAGTGCTGTACCGATTGCAAAACGACTAAGACCCCACTCTGGAGAGGAGGACCTGCTGGGCCCAAGACGCTGTGTAACGCTTGCGGGATAAGGTACAGGAAGAAAAAGGTTTCCACAGTGGGATTGAACAAAGGACAAGAGAAGAGAAGAGAGAGAACACAGAGTCGAGGTGGTGGTAGAGCTGTTGGTGATGGTGGAAACGATTTGAAGGAGTGTTTGAAGATGAAGTTGATGGCATTAGGTGAAGAGGTTTTGTTGCAACGGTCACACTCAGTGGTGAAGAAGCAGAGGTGCCAGAGGAGGAGGAAGTTAGGGGAGGTGGAACAAGCCGCCGTTTGCTTGATGGCCTTGTCCTGTGGCTTTGTTTTCGCTTAA 483 0.4907 MCSPHAACWCALSSYVEQHSRFGDSEMSYEELTNNKKCCTDCKTTKTPLWRGGPAGPKTLCNACGIRYRKKKVSTVGLNKGQEKRRERTQSRGGGRAVGDGGNDLKECLKMKLMALGEEVLLQRSHSVVKKQRCQRRRKLGEVEQAAVCLMALSCGFVFA 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3707 160 ProSitePatterns GATA-type zinc finger domain. 39 64 IPR000679 GO:0006355|GO:0043565
Dere01g3707 160 PANTHER OS01G0976800 PROTEIN 29 159 - -
Dere01g3707 160 MobiDBLite consensus disorder prediction 77 93 - -
Dere01g3707 160 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 35 74 - -
Dere01g3707 160 Pfam GATA zinc finger 39 73 IPR000679 GO:0006355|GO:0043565
Dere01g3707 160 CDD ZnF_GATA 39 73 IPR000679 GO:0006355|GO:0043565
Dere01g3707 160 Gene3D - 34 94 IPR013088 GO:0006355|GO:0008270
Dere01g3707 160 ProSiteProfiles GATA-type zinc finger domain profile. 33 69 IPR000679 GO:0006355|GO:0043565
Dere01g3707 160 SMART GATA_3 33 94 IPR000679 GO:0006355|GO:0043565
Dere01g3707 160 MobiDBLite consensus disorder prediction 77 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3707 Dere-ChrDere01 51337481 51340376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3707 30 160 C2C2-Gata Transcription Factor Family AT3G06740 50.000 4.45e-33 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Dere01g3707 GATA 1e-17 CL0167