Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3689 ATGGCTTCGACTAGTGGAATGGCTAGTGGTGATTCCATGAATGTTGATAAACTTCCTGAGGAGATCAATGAAATGAAGATCAAGGATGAAAAGGAAATAGAGACAACAACGGTAGATGGAAATAGAACTGAAACTGGTCACATCATTGTGACAACAATTGGGGGTCGAAATGGTCAACCCAAACAGACCTTAAGTTACATGGCTGAGCGTGTTGTTGGACAAGGCTCATTTGGTATTGTGTTTCAGGCCAAGTGTCTTGAAACTGGAGAAACTGTAGCAATCAAGAAGGTTTTGCAAGATAAAAGATACAAGAACCGTGAACTACAAACAATGTACTTTCTTGATCATCCTAATGTCGTGTCACTCAAACACTACTTCTTTTCCACTACAGACAAGGATGAGCTCTATCTCAATTTGATTTGCAGAGCTTTGGCTTATATTCATGGATGTGTTGGAGTGTGCCACAGGGATATTAAACCTCAGAACCTATTAGTTAATCCCCACACTCATCAGGTTAAGCTTTGTGATTTTGGATGTGCAAAAGTTCTGGTCAAAGGTGAACCCAATATATCATATATTTGCTCTCGTCACTACCGAGCACCAGAACTTATTCTTGGGGCAACTGAATATACAACTGCAATTGATATGTGGTCTGTGGGTTGTGTCCTAGTTGAGTTGCTCCTGGGACAGCCTATATTCCTTGGGGAAAGTGGAGTTAACCAACTTGTTGAGATTATCAAGGTACTTGGAACACCGACTCATGAGGAAATAAAATGCATGAATCCAAATTGTATAGAGTTTGAGTTCCCTAAAATCAAGGCTCAGCCTTGGTATAAGTTAGATGCATGTGTACACCCATTTTTTGATGAACTTCGCGATCCTAATACCTGTCTCCCTAACGGGCACCCGTTGCCACCTCTCTTTAACTTTAAACCTCATGAGCTAAAAGGAGCAACCTTGGAGGCTTTATGCAAACTTGTTCCAGTACATTGTCGAAAGTTGTGTCCTTCGCTTAACTTGTAG 1023 0.4106 MASTSGMASGDSMNVDKLPEEINEMKIKDEKEIETTTVDGNRTETGHIIVTTIGGRNGQPKQTLSYMAERVVGQGSFGIVFQAKCLETGETVAIKKVLQDKRYKNRELQTMYFLDHPNVVSLKHYFFSTTDKDELYLNLICRALAYIHGCVGVCHRDIKPQNLLVNPHTHQVKLCDFGCAKVLVKGEPNISYICSRHYRAPELILGATEYTTAIDMWSVGCVLVELLLGQPIFLGESGVNQLVEIIKVLGTPTHEEIKCMNPNCIEFEFPKIKAQPWYKLDACVHPFFDELRDPNTCLPNGHPLPPLFNFKPHELKGATLEALCKLVPVHCRKLCPSLNL 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3689 340 Gene3D Transferase(Phosphotransferase) domain 1 139 331 - -
Dere01g3689 340 ProSitePatterns Protein kinases ATP-binding region signature. 72 96 IPR017441 GO:0005524
Dere01g3689 340 Gene3D Phosphorylase Kinase; domain 1 59 138 - -
Dere01g3689 340 ProSitePatterns Serine/Threonine protein kinases active-site signature. 153 165 IPR008271 GO:0004672|GO:0006468
Dere01g3689 340 Pfam Protein kinase domain 135 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g3689 340 FunFam Glycogen synthase kinase-3 beta 50 147 - -
Dere01g3689 340 CDD STKc_GSK3 61 291 IPR039192 -
Dere01g3689 340 FunFam Mitogen-activated protein kinase 122 290 - -
Dere01g3689 340 SMART serkin_6 66 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g3689 340 SUPERFAMILY Protein kinase-like (PK-like) 65 292 IPR011009 -
Dere01g3689 340 ProSiteProfiles Protein kinase domain profile. 66 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g3689 340 Pfam Protein tyrosine and serine/threonine kinase 69 127 IPR001245 GO:0004672|GO:0006468
Dere01g3689 340 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 280 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3689 Dere-ChrDere01 51234905 51240061 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3689 59 269 Core Cell Cycle Gene Families AT1G73690 35.743 5.75e-43 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Dere01g3689 Pkinase 2.9e-36 CL0016