Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3677 ATGGTTGCCATACTGCTAAATCCCAAGGAGTGGGGAACTCTTTGTCGTCCCATTCTGGTTGCCCCTAATCTCATTGATTTCTCTTTTCGAGTTTTTGCACATTACACCATATCAACTCAGTTAGTTGTTCTTCTGGCAGTCATCATGGACCATGTTCACAGGTTAAACCCTATGGCATCATCCCGTACGGCGGACGCTGCTGGGGTTGGTAACGTTTCATCTACTTCTGAATTGCATCGTGGACCGGTGGTTCATAACTACGCACGGCGGAATGCACCTGAACCGGAAGGAACCGGCTCAGTTATGCCGGATCAGTTGATCAAGACTCAAATCGCCAATCACCCTCTTTATCCTAATTTGCTTTCTGCATACATTGAATGCCAAAAGGTTGGAGCTCCACCAGAACTGGCGTCCCTTCTGGAAGAAATAGGCCGCGAAAATCACCCCATCAATACTCGCTGTCAGATTGGGGACGATCCTGAGCTTGACGACTTCATGGAATCATACTGCGAAGTTCTTCATAGATACAAAGAGGAGTTGTCCAGGCCCTTCAACGAAGCGACCTTGTTTCTGAGTAATATTGAATCACAGCTTACCAACCTTTGCAAGGGAACAATAATGAAGTCCTCCGGATATCGTTCTGATGAGGCAGGAGTGACTTCAGAGGAGGAATTAAGTTGTGGTGAGGTGGAAGCAGTTGATGGTCCTGAATCTTCTGGCACTTGCCAAGGTGATCATGAGATTAAAGAAATACTTATGCGTAAGTACAGTGGCTATCTTAGCAATCTCAGAAAAGAGTTCTTAAAGAAAAGGAAAAGTGGTAAGCTTCCAAAGGATGCCAGGATGGCATTGCTCAATTGGTGGAACACCCACTACAGATGGCCATATCCTACGGAGGAGGAAAAACAGAAGCTATCCGAAATGAGTGGGCTGAACCAGAAGCAGATAAATAACTGGTTTATCAATCAGAGAAAACGGCATTGGAAACCATCTGATGATATGAGATTCGCCATCTTGGAGGGTGTAAGTGGGAGCGCCCTTGGAGGCCCTATCTACTTTGATTCTGCTCCTCCGCCTCAACCTCATCGCTAA 1092 0.4625 MVAILLNPKEWGTLCRPILVAPNLIDFSFRVFAHYTISTQLVVLLAVIMDHVHRLNPMASSRTADAAGVGNVSSTSELHRGPVVHNYARRNAPEPEGTGSVMPDQLIKTQIANHPLYPNLLSAYIECQKVGAPPELASLLEEIGRENHPINTRCQIGDDPELDDFMESYCEVLHRYKEELSRPFNEATLFLSNIESQLTNLCKGTIMKSSGYRSDEAGVTSEEELSCGEVEAVDGPESSGTCQGDHEIKEILMRKYSGYLSNLRKEFLKKRKSGKLPKDARMALLNWWNTHYRWPYPTEEEKQKLSEMSGLNQKQINNWFINQRKRHWKPSDDMRFAILEGVSGSALGGPIYFDSAPPPQPHR 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3677 363 CDD homeodomain 270 331 IPR001356 GO:0003677
Dere01g3677 363 SMART HOX_1 269 334 IPR001356 GO:0003677
Dere01g3677 363 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 89 337 - -
Dere01g3677 363 ProSiteProfiles ELK domain profile. 247 267 IPR005539 GO:0003677
Dere01g3677 363 Pfam Homeobox KN domain 287 326 IPR008422 GO:0003677|GO:0006355
Dere01g3677 363 ProSiteProfiles 'Homeobox' domain profile. 267 330 IPR001356 GO:0003677
Dere01g3677 363 SMART KNOX1_2 105 149 IPR005540 GO:0003677|GO:0005634
Dere01g3677 363 SMART KNOX2_2 152 203 IPR005541 GO:0003677|GO:0005634
Dere01g3677 363 ProSitePatterns 'Homeobox' domain signature. 305 328 IPR017970 GO:0000981|GO:0006355
Dere01g3677 363 Pfam KNOX1 domain 107 148 IPR005540 GO:0003677|GO:0005634
Dere01g3677 363 Gene3D - 265 337 - -
Dere01g3677 363 SUPERFAMILY Homeodomain-like 269 335 IPR009057 -
Dere01g3677 363 SMART ELK_2 247 268 IPR005539 GO:0003677
Dere01g3677 363 Pfam KNOX2 domain 155 202 IPR005541 GO:0003677|GO:0005634
Dere01g3677 363 Pfam ELK domain 247 268 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3677 Dere-ChrDere01 51010922 51016019 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3677 69 345 Homeobox Transcription Factor Family AT1G23380 50.523 4.75e-84 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Dere01g3677 KNOX2 8.7e-25 No_clan