Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3666 ATGCCGCTGAAACCAAAGTCCACTCCAAATTCAAAACCCTACTTCAAACCGGGGTCTGCCGTCGAGATTAGCTCTGACGATGAGGGGTTTCGCGGTTCTTGGTTTGTGGGCACCGTCATTCGCCGCTGCTCTTCCAAGAAGAACCAGAACAAATTCTTAGTGGAATATAAGACCCTCGTGGCCGACGAGAAGGGTTCCAAACCCTTGAGAGAGATGCTGGATCTCCACCAGCTTCGACCCCTTGCCCCTCGGGAGTCTGACCGCGACTTCAAGTTCGGCGAAGAGGTCGATGCATACCACAACGATGGCTGGTGGGAAGGCTCCATAACCGAAGAGATGGGAAACGGGAGGTTTGCGGTGTATTTCAGGGTCTCAAAGGAGCAGATTGAGTTTGGGAAGGAGGACCTTAGGCTCCATCGTGAGTGGGTCAATGGGAGTTGGGTCCCTCCATTGGAAGAACCATCGGAAGAAAAGAAAGTTTTGACCAACGAAGTGAAGTCTAGTGAAACTTTGACGGATATGTTTAGCAAGGGGACACTAGTTGAGGTTAGCAGTGATGAAGATGGTTTCGAAGGAGCTTGGTTTGCTGCTACCGTTGTTGAATCAAAGGGAAATGATAAGTTTATTGTTGAGTACCTGAGCCTTCGGACTGATGATGATTCAGAGTTTTTAAGAGAGGAAATTGATTTCTTACATATTCGGCCTTCTCCACCAGAACATGTTTGTGATCGCTTTAATCTTCTTGAAGAAGTTGATGCTTTGTACAACGATGGATGGTGGGTCGGAGTGATTTCCAAAGTTCTTAGCAACTCAAGCTATGTAGTATACTTCAGGAACAGCAATGAAGAACTGGAGTTTCAACTCTCCCAATTAAGGCTACATCAGGACTGGATTAACGGCAAATGGGTTGTTCCTTCTAAGGCATTGAAGTTGTAA 936 0.469 MPLKPKSTPNSKPYFKPGSAVEISSDDEGFRGSWFVGTVIRRCSSKKNQNKFLVEYKTLVADEKGSKPLREMLDLHQLRPLAPRESDRDFKFGEEVDAYHNDGWWEGSITEEMGNGRFAVYFRVSKEQIEFGKEDLRLHREWVNGSWVPPLEEPSEEKKVLTNEVKSSETLTDMFSKGTLVEVSSDEDGFEGAWFAATVVESKGNDKFIVEYLSLRTDDDSEFLREEIDFLHIRPSPPEHVCDRFNLLEEVDALYNDGWWVGVISKVLSNSSYVVYFRNSNEELEFQLSQLRLHQDWINGKWVVPSKALKL 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3666 311 MobiDBLite consensus disorder prediction 1 21 - -
Dere01g3666 311 CDD Tudor_Agenet_AtDUF_rpt1_3 15 83 - -
Dere01g3666 311 SMART agenet_At_2 173 241 IPR014002 -
Dere01g3666 311 SMART agenet_At_2 88 144 IPR014002 -
Dere01g3666 311 SMART agenet_At_2 243 299 IPR014002 -
Dere01g3666 311 SMART agenet_At_2 13 86 IPR014002 -
Dere01g3666 311 CDD Tudor_Agenet_AtDUF_rpt1_3 175 238 - -
Dere01g3666 311 CDD Tudor_Agenet_AtDUF_rpt2_4 247 293 - -
Dere01g3666 311 Pfam Agenet domain 178 238 IPR008395 -
Dere01g3666 311 Pfam Agenet domain 93 151 IPR008395 -
Dere01g3666 311 Pfam Agenet domain 18 83 IPR008395 -
Dere01g3666 311 CDD Tudor_Agenet_AtDUF_rpt2_4 93 138 - -
Dere01g3666 311 Gene3D - 165 245 - -
Dere01g3666 311 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 170 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3666 Dere-ChrDere01 50894994 50897389 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3666 185 297 PHD Transcription Factor Family AT5G58610 29.851 7.78e-09 55.1