Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3651 ATGCCACTTGGGAAATACTACTGCGACTATTGCGACAAACACATACAAGATACCCCTACCGCGCGGAAACGACACCTTCAAGGCATCCAGCACCTCCGTGCCAAAGCTCTTTGGTACGATTCCATCAAATTTCAAGATCCTAATCAGGCTTATCCAGAGGGATTAGGCAAAGGGGTTTGCAATCGCTTCATCAAAACGGGTTTTTGCCAGTACGGTGATTCTTGCAGATATGTTCATCCAAAAAACTTCCCTAATGCCAACCCTCAAGGAGGAGTTCTTGATAATATACAGTCAGCAGCAATAACCATGGGGACTCATTTGGCTGGCGGAAGCTCCACAACAGGAAATGTGGTGCAAGATAGTATGGGAATGTCATGGGGCAATTTACCTCCATCTCTGAAGCCTCCTCCTGAGGGTGAATATCCTGCCCTTCCCCTTGTGGATTGGGGATAG 453 0.4746 MPLGKYYCDYCDKHIQDTPTARKRHLQGIQHLRAKALWYDSIKFQDPNQAYPEGLGKGVCNRFIKTGFCQYGDSCRYVHPKNFPNANPQGGVLDNIQSAAITMGTHLAGGSSTTGNVVQDSMGMSWGNLPPSLKPPPEGEYPALPLVDWG 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3651 150 Gene3D Classic Zinc Finger 3 48 - -
Dere01g3651 150 SMART ZnF_U1_5 3 38 IPR003604 GO:0003676|GO:0008270
Dere01g3651 150 ProSiteProfiles Zinc finger C3H1-type profile. 54 82 IPR000571 GO:0046872
Dere01g3651 150 FunFam U1 zinc finger family protein 3 56 - -
Dere01g3651 150 SMART c3hfinal6 56 81 IPR000571 GO:0046872
Dere01g3651 150 Gene3D - 49 108 - -
Dere01g3651 150 Pfam U1 zinc finger 5 37 IPR013085 GO:0008270
Dere01g3651 150 PANTHER NUCLEASE-RELATED 1 150 - -
Dere01g3651 150 SUPERFAMILY beta-beta-alpha zinc fingers 4 43 IPR036236 -
Dere01g3651 150 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 59 81 IPR000571 GO:0046872
Dere01g3651 150 SUPERFAMILY CCCH zinc finger 58 81 IPR036855 GO:0046872
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3651 51 101 C2H2 Transcription Factor Family AT5G18550 37.255 1.01e-06 45.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dere01g3651 zf-U1 2.3e-12 CL0361