Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3649 ATGGGGACTGAAAATCCTGGACGTCCAAGTTTCCCCGCAAGACCTGCCGCCACACCTTTTGCTGCTCCACAGACGATGACACCATTTTCATCCACTGGTCCTGTGGTTGGATCAGAGCCTCTTTTCCGGCCTGCTCCTCCTGCTGCTCCCCATACCTCGATGCCATTTTCGTCATCCGGACCTACACTCTCGCCAGGGGCATCCAGTTTTAGACCTATGCCCCAAGGCAGGTTTAATGATCCATCAGTGCCTCCGCCTGCAACATACAATGTCCCACCTGCTAGTGGACCTTTACAGCGTTTTCCAACTCCACAGTTTACTTCAACAGCTCAAGCACCTCCTCATGTTCCACCCATGGGACAACCATCAATTCAACCTTCTGCATATCAAGCACCACGTTTTCCAGCATCCCTTCAACCTCAGACACCTTTTGTTCCAATGGGTTCTCCCCCACAAAGTGCCACTCCTGCACCTTTGAATTCAAATGTTCCTCCTCTGTCAGATTTATCAATTCCGGGATCTAGGCCTAATTTTCAGCCATCTTTTCCTGGATATGCCCGGAAGCAGACTGGCGCTGAAATGCAAGGTCCACCTGTTCTATCTCATCAAGGGAGCTATGTTCCACCACCTCCCGTTGCTGCTCCCCTAGGCATGCCGCAGATGCAACAGCCAGGATATGGACCTTCTACCGGTGCCATTCAGGGCCTGACTGAGGACTTTAATTCACTCTCTATTCAAACTCGTCCTGGAACAATGGATCAAGTAGTTGATGTTAAAGAACTGCCAAGGCCACTGGATGGTGATGTAGAGCCAAGGTCTCTGGCTGAGAATTATACCATGAATTGCAATCCCAGATATCTACGGCTAACAACCAGTGCAATTCCCAGCTCACAGTCCTTAGCTTCAAGGTGGCATCTACCTCTTGGGGCAGTTGTCTGTCCACTTGCAGAAGCTCCTGATGGGGAAGAGTTGCCTATAATTAATTTTGCTCCAACTGGTGTGATACGCTGTAGGAGATGTCGCACGTATGTGAATCCATATGTGACATTCACAGATGCAGGAAGAAAATTCCGATGCAATGTTTGCACTTTGCTTAATGATGTTCCTAGTGAATATTTTGCTCAATTAGATGCCACTGGTAGAAGAGTTGATTTGGATCAAAGACCTGAACTTACAAAGGGTACTGTGGAATTTGTTGCCCCTGCTGAATATATGGTGCGACCTCCTATGCCCCCAGTATATTTCTTCCTCATTGATGTTTCCATATCTGCAGTTAGAAGTGGAATGATTGAGGTTGCTGCCCAAACAATCAAGTCATGTTTAGATGAGTTGCCTGGCTTTCCACGAACACAAATAGGTTTTGCAACATTTGACAGCACAATTCATTTTTATAATATGAAGTCGTCATTGACTCAGCCGCAGATGTTGGTAGTCTCAGATCTGGATGACATATTTGTTCCACTACCAGATGATCTCCTTGTTAATTTATCTGAATCCAGAAGTGTGGTGGAAAGCTTCCTAGATAGTTTGCCATCCATGTTTTGGGACAATGTGAATATGGAGTCAGCATTTGGTCCAGCTCTTAAGGCTGCATTTATGGTTATGAGTCAACTTGGGGGTAAATTGTTAATTTTCCAAAATACACTGCCATCTCTTGGTGTTGGACGCTTGAAATTACGTGGAGATGATATTCGCGTTTATGGGACTGATAAAGAACAAGCACTAAGGTTGCCAGAGGATCCATTTTACAAGCAAATGGCTGCGGAGTTTTCTAAATACCAGATCTGTGTGAATGTGTATGCATTCAGTGACAAGTACACTGACATAGCCTCCTTAGGGACTCTGGCAAAGTATACTGCTGGTCAAGTGTATTATTATCCAGCTTTTCAGTCAGTTATTCATGGGGAGAAATTGAGGCGCGAATTAGGGAGAGACCTTACCAGAGAAACTGCTTGGGAAGCTGTACTGCGCATTAGATGTGGAAAAGGTGTTCGCTTCACAACTTTTCATGGGAACTTTATGCTAAGGTCCACTGATTTGTTAGCACTTCCAGCTGTAGATTGTGATAAAGCATTTGCCATGCAGTTATCTCTTGAAGAGACATTGCTGACAACTCAGACCATGTATTTCCAAGTTGCATTGCTATATACTGCATCTTGTGGAGAAAGGCGAATCAGAGTACACACAGCTGCAGCTCCAGTAGTTACAGACTTGGGAGAGATGTATCGCCTGGCTGATACTGGTGCCATAGTTTCTCTGCTTAGTAGGCTAGCAATTGAGAAAACATTGTCTAGTAAACTGGAGGATGCAAGGAGTGCTGTACAGCTAAGAATTGTCAAAGCCCTCAGAGAATATCGAAACTTATATGCTGTGCAACATCGCTTGGCCAACAGGATGATATACCCTGAGTCTCTAAAATTTCTACCCCTGTATGGATTAGCACTTTGTAAATCAATACCTCTCCGTGGAGGGTATGCTGATGCTCCACTGGATGAACGGTGTGCAGCAGGATACACAATGATGGCTCTACCAATAAAAGGGCTGTTGAAACTTCTGTATCCAAGCTTAATTCAACTTGATGAATATCTGTTAAAGTCTGATGAATTAAAAACCATTGAGAAAAGATTACCGTTGACCGTGGAGAGCTTGGATTCTAGAGGCCTTTATGTATACGATGATGGCTTCCGGTTCATAATATGGTTTGGTCGAGTGCTTTCACCTGATTTTGCTAAGAATTTGCTCGGGACAGACTTTGCTGCAGAATTATCGAAGGTTACTCTTAATGAGCATGATAATGAGATGTCAAGGAAGCTGATTAGGGTACTTGAGAAATTGAGAAATATTGATCGTTCATATTATCAGTTGTGCCTCCTTGTGAGGCAAGGTGAACAGCCCAGAGAAGGATTCCTTATTCTTGCAAACCTTGTTGAGGATCAGATGGGTGGTAACAGTGGGTATGCTGATTGGATTCTACAGATATCCCGACAAGTGCAGCAATGA 3000 0.4457 MGTENPGRPSFPARPAATPFAAPQTMTPFSSTGPVVGSEPLFRPAPPAAPHTSMPFSSSGPTLSPGASSFRPMPQGRFNDPSVPPPATYNVPPASGPLQRFPTPQFTSTAQAPPHVPPMGQPSIQPSAYQAPRFPASLQPQTPFVPMGSPPQSATPAPLNSNVPPLSDLSIPGSRPNFQPSFPGYARKQTGAEMQGPPVLSHQGSYVPPPPVAAPLGMPQMQQPGYGPSTGAIQGLTEDFNSLSIQTRPGTMDQVVDVKELPRPLDGDVEPRSLAENYTMNCNPRYLRLTTSAIPSSQSLASRWHLPLGAVVCPLAEAPDGEELPIINFAPTGVIRCRRCRTYVNPYVTFTDAGRKFRCNVCTLLNDVPSEYFAQLDATGRRVDLDQRPELTKGTVEFVAPAEYMVRPPMPPVYFFLIDVSISAVRSGMIEVAAQTIKSCLDELPGFPRTQIGFATFDSTIHFYNMKSSLTQPQMLVVSDLDDIFVPLPDDLLVNLSESRSVVESFLDSLPSMFWDNVNMESAFGPALKAAFMVMSQLGGKLLIFQNTLPSLGVGRLKLRGDDIRVYGTDKEQALRLPEDPFYKQMAAEFSKYQICVNVYAFSDKYTDIASLGTLAKYTAGQVYYYPAFQSVIHGEKLRRELGRDLTRETAWEAVLRIRCGKGVRFTTFHGNFMLRSTDLLALPAVDCDKAFAMQLSLEETLLTTQTMYFQVALLYTASCGERRIRVHTAAAPVVTDLGEMYRLADTGAIVSLLSRLAIEKTLSSKLEDARSAVQLRIVKALREYRNLYAVQHRLANRMIYPESLKFLPLYGLALCKSIPLRGGYADAPLDERCAAGYTMMALPIKGLLKLLYPSLIQLDEYLLKSDELKTIEKRLPLTVESLDSRGLYVYDDGFRFIIWFGRVLSPDFAKNLLGTDFAAELSKVTLNEHDNEMSRKLIRVLEKLRNIDRSYYQLCLLVRQGEQPREGFLILANLVEDQMGGNSGYADWILQISRQVQQ 999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3649 999 Gene3D - 282 734 - -
Dere01g3649 999 Pfam Sec23/Sec24 helical domain 746 849 IPR006900 GO:0006886|GO:0006888|GO:0030127
Dere01g3649 999 Pfam Sec23/Sec24 zinc finger 335 372 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Dere01g3649 999 Gene3D von Willebrand factor, type A domain 411 648 IPR036465 -
Dere01g3649 999 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 864 999 IPR036180 -
Dere01g3649 999 CDD SP5_N 44 167 - -
Dere01g3649 999 SUPERFAMILY beta-sandwich domain of Sec23/24 178 744 - -
Dere01g3649 999 Pfam Gelsolin repeat 872 928 IPR007123 -
Dere01g3649 999 MobiDBLite consensus disorder prediction 78 92 - -
Dere01g3649 999 PANTHER SEC24-RELATED PROTEIN 81 997 - -
Dere01g3649 999 Gene3D - 280 393 - -
Dere01g3649 999 CDD Sec24-like 409 650 IPR041742 GO:0006886|GO:0006888|GO:0030127
Dere01g3649 999 MobiDBLite consensus disorder prediction 52 69 - -
Dere01g3649 999 MobiDBLite consensus disorder prediction 123 137 - -
Dere01g3649 999 Gene3D Sec23/Sec24 helical domain 735 997 - -
Dere01g3649 999 Pfam Sec23/Sec24 beta-sandwich domain 651 734 IPR012990 -
Dere01g3649 999 FunFam protein transport protein Sec24D isoform X1 411 648 - -
Dere01g3649 999 Gene3D Severin 854 978 IPR029006 -
Dere01g3649 999 MobiDBLite consensus disorder prediction 1 179 - -
Dere01g3649 999 SUPERFAMILY vWA-like 409 648 IPR036465 -
Dere01g3649 999 SUPERFAMILY Helical domain of Sec23/24 746 853 IPR036175 GO:0006886|GO:0006888|GO:0030127
Dere01g3649 999 MobiDBLite consensus disorder prediction 154 177 - -
Dere01g3649 999 SUPERFAMILY Zn-finger domain of Sec23/24 326 408 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Dere01g3649 999 MobiDBLite consensus disorder prediction 100 114 - -
Dere01g3649 999 Pfam Sec23/Sec24 trunk domain 409 645 IPR006896 GO:0006886|GO:0006888|GO:0030127
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3649 Dere-ChrDere01 50769073 50776257 Proximal