Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3637 ATGGATGTAATCACAGTGGAGAGAAAAGAATTGATTAGAAACATTGGGATAATGGGTGTGTCCATGGTGGTCATTGCAGCCATCACCGTGGTTGTCATCACCGGAACTGAAAGCTCCGACCAAGGTCTTGGCACTACGAAAACCCTTGTCTACGTTTGCAGCCATACAAATCATCCGGAAAATTGTTATGTTAGCCTGAAATACGCAGGCGAAAGAGCCACCCTTATAGACTACGTAAAAACTTCTATTAATGTGGCTATTGCAGGACTGAAGGTAATCATCACGCCTAAACCTGAGCTTGAAAAAAATTTAACGCCTCTGCAGGCACAGTTAATCAGAGATTGCATGCAATTGTTGGATTTGGGAATAGAAGAACTTGAATCCTTGTACGCAATAGCAAATTCCTCGTACGACTTGTCCGCAATGAATTTAGATGACGTTATGAACGGCTTAAGTGCTGTCATTTCATACCAACAAACTTGCTCTGATGCCCTTTTGCAGACAAACACCTTCGATGTTTCTGGGTATTCGTTGGAAAAACCCATTCTTCTTACAAGGATAACCTTGGCCATTGTTCATAGTTTCTCCGGGCATGCTAATGTTACGGTTGATCTTGCAGACAAATCCCCCACTAGGAGACTCTTAACCACCACTGATTTGGGATACCCCAAATGGTTTTCGGCAAGAGATCGCAAACTATTACAGTCTCAAAGAGATGGTGGTTCGCAGGCAAATGCAGTTGTAGCTGCAGATGGAAGAGTACCAGCATTGTTAGTCCTTTCTGGTCGTTCAGCATTCTTCAATTGCAAAATAGATGGTGAAGAAGGCAGCTTGTTTGCAGTAGCACATCGTCAATTCTACAGAAACTGTCAAATATATGGTAATGCGGATATCATCAAGGGAGACTCTGCAACTGTAATACAGAATTCAGACATCATAGTAAAAGCTCAAAACTCCTCCGATGTTAATGTAAGGAGAAACGTCGTGACAGCACAATATAGAATAGATACGTTTGAGAGAACTGGGTTTGTGATCCAAAACTGCACCATCACAGGAGACATGGAATGCACAAGTGTCAGTCTTATTAATAGCACTTACTTAGGGACCCCATATAAGGAATTCTCGAGAACAATCATAATGGAGTCGTTTATAGGAAATGTGATAGATCCAGAAGGATGGTGTAAATGGAGTGATGAGTATGGGACTGGAACAGCAAGCTTTGGAGAGTATGATAACAGAGGGCCAGGGGCTAGAACTAACAAGAGGGTGAGCTGGGGGGCATACAAAACAGTGAGTCGTAGAGAGCGAGTGGTGAGTTTCACAGCTGGTCAATTTATCCAAGCAGACCAATGGCTGCAAAATGCAGGCATTCCATACGCATCTGGGTTTTCCCAGAAATAG 1401 0.4297 MDVITVERKELIRNIGIMGVSMVVIAAITVVVITGTESSDQGLGTTKTLVYVCSHTNHPENCYVSLKYAGERATLIDYVKTSINVAIAGLKVIITPKPELEKNLTPLQAQLIRDCMQLLDLGIEELESLYAIANSSYDLSAMNLDDVMNGLSAVISYQQTCSDALLQTNTFDVSGYSLEKPILLTRITLAIVHSFSGHANVTVDLADKSPTRRLLTTTDLGYPKWFSARDRKLLQSQRDGGSQANAVVAADGRVPALLVLSGRSAFFNCKIDGEEGSLFAVAHRQFYRNCQIYGNADIIKGDSATVIQNSDIIVKAQNSSDVNVRRNVVTAQYRIDTFERTGFVIQNCTITGDMECTSVSLINSTYLGTPYKEFSRTIIMESFIGNVIDPEGWCKWSDEYGTGTASFGEYDNRGPGARTNKRVSWGAYKTVSRRERVVSFTAGQFIQADQWLQNAGIPYASGFSQK 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3637 466 SUPERFAMILY Pectin lyase-like 250 461 IPR011050 -
Dere01g3637 466 SMART PMEI_2 45 191 IPR006501 GO:0004857
Dere01g3637 466 PANTHER PECTINESTERASE 25 252 - -
Dere01g3637 466 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 52 195 IPR035513 -
Dere01g3637 466 Gene3D - 198 465 IPR012334 -
Dere01g3637 466 Gene3D Invertase/pectin methylesterase inhibitor family protein 46 195 IPR035513 -
Dere01g3637 466 Pfam Pectinesterase 247 449 IPR000070 GO:0030599|GO:0042545
Dere01g3637 466 Pfam Plant invertase/pectin methylesterase inhibitor 52 170 IPR006501 GO:0004857
Dere01g3637 466 CDD PMEI-like_3 52 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3637 Dere-ChrDere01 50645393 50647165 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3637 256 463 Carbohydrate Esterase AT3G05610 40.865 6.25e-51 181