Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3625 ATGCCCAGATCGAGATTGAGGTATGAGTTCATCGCCAAAAACGCTGCGAGAAAAGCAACGTACAGGAAAAGAAAGGGTGGTTTCATAAAAAAGTTGAACGAGCTTACAGCTCTGTGTGGTGTTCATGCCTGTGCTATTATCTGCAGTCCCTATGATTCCCAGCCAGAGGCGTGGCCACACCCACTAGCAGCCCACCACATGGTTTCCCGGTACAGGGTTACGCCTTTCTACAAGAAGAGGACGACGAACCAGGAGACTTTCATCAGGCAGAGGATCGAGAAGGTGAACCAGCAGGTGGAGAGGCTGAGGAAGGAGAATCGTGAGAAGGAAACGCAGATGATCGTGTTAGAAGGTATGGCTGGGATGGGGCTGGAGAAACTGTCCAGGATTGATGTGAATGATACTGTGTGGCATATTGAGAAGAAACTAGTGGCCATACACAAGAAGATGGAGGACATGGAGAAGGAGCAGGTATATAGGCCCGGGCCACCATTGCCTAGTACTGATCAAGCTTATGGTCGCGTACAGCGAGTGAATGATCAGATGAGCCCACAAAATGGTGAGCATCAATGGTGGAGGGACAACTACCTGGCCTTTGGAGAAGGTGAGCTGCATTTGGCGTTTGGAGATATTAGCCACAGAGAGAAGGATTTCTGGTCCAAATTGTTCCCTTGA 675 0.4948 MPRSRLRYEFIAKNAARKATYRKRKGGFIKKLNELTALCGVHACAIICSPYDSQPEAWPHPLAAHHMVSRYRVTPFYKKRTTNQETFIRQRIEKVNQQVERLRKENREKETQMIVLEGMAGMGLEKLSRIDVNDTVWHIEKKLVAIHKKMEDMEKEQVYRPGPPLPSTDQAYGRVQRVNDQMSPQNGEHQWWRDNYLAFGEGELHLAFGDISHREKDFWSKLFP 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3625 224 CDD MADS_SRF_like 3 81 IPR033897 GO:0000981|GO:0000987|GO:0045944
Dere01g3625 224 PANTHER MADS BOX PROTEIN 10 141 - -
Dere01g3625 224 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Dere01g3625 224 SUPERFAMILY SRF-like 1 80 IPR036879 GO:0003677|GO:0046983
Dere01g3625 224 Gene3D - 14 117 IPR036879 GO:0003677|GO:0046983
Dere01g3625 224 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Dere01g3625 224 Coils Coil 85 119 - -
Dere01g3625 224 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3625 Dere-ChrDere01 50549628 50550302 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3625 1 151 Type I MADS-box Gene Family AT5G48670 38.312 7.96e-29 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Dere01g3625 SRF-TF 1.7e-12 No_clan