Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3624 ATGAGTGGAAAGAGAGTGAATCTTGCATACATCTCCAATGATGCTGCAAGAAAAGCATCATACAATAGAAGGAAGAAAGGTCTTGCAAAAAAGGTGAGTGAACTAACTACACTTTGTGGGATTCACGCATGTATGATAATTTTCAGCCCCTATGATTTTGAACCAGAGATTTGGCCAGATCTAAAAGAAGCCCAACAGGTGATCACATGGTATCAAAATACACTTGAGATGGATCAAAGGAAGAATTTGAAGCAAGAGAGTTTTATTAGGCAAATGATTGCCAAAGTTAGCGACCAGCTGAAAAAGCAGCGTAAAGAAAATTGTGAGAAAGAGATGACGCTAACTATGTTCCAATGTCTTGAAGGGAAGAGGTGGGATGACATGATGATAGAGGATCTAAATGACATGAATTACTTGATCGAGAAGAACATAAAGGACATCGACAAGAAACTGGACAAGCTTATTTGA 468 0.3846 MSGKRVNLAYISNDAARKASYNRRKKGLAKKVSELTTLCGIHACMIIFSPYDFEPEIWPDLKEAQQVITWYQNTLEMDQRKNLKQESFIRQMIAKVSDQLKKQRKENCEKEMTLTMFQCLEGKRWDDMMIEDLNDMNYLIEKNIKDIDKKLDKLI 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3624 155 PANTHER MADS BOX PROTEIN 5 151 - -
Dere01g3624 155 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dere01g3624 155 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Dere01g3624 155 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dere01g3624 155 SUPERFAMILY SRF-like 4 83 IPR036879 GO:0003677|GO:0046983
Dere01g3624 155 Gene3D - 13 116 IPR036879 GO:0003677|GO:0046983
Dere01g3624 155 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Dere01g3624 155 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Dere01g3624 155 CDD MADS_SRF_like 4 59 IPR033897 GO:0000981|GO:0000987|GO:0045944
Dere01g3624 155 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3624 Dere-ChrDere01 50537281 50537748 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3624 1 154 Type I MADS-box Gene Family AT5G48670 50.641 6.22e-45 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Dere01g3624 SRF-TF 1.5e-15 No_clan