Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3620 ATGCCTCTTTATGAGTTATACAGGCTGACTAAAGCAAAGCTTGATTCCAAAGAGATAAACAGCACTTTTGCAACTGATCAATCTTCCGCACCGGAGAATGACTTTTTTGAGCTGGTTTTGGAAAATGGTCAGATTTCAATGCAAAGTAAGTCAAGTAGAGCAAGAAAGAGCCCAGTATGTAAGAGTCTTCCATCTCACAGTCCAAGGTCTCGAGATAAAGATGTAGGATATGATACCAATACAAGGATGGGAAAGTTGGGGGATTTAGACTCTGGATTAAATGAAATTCCAATGTCTGTTCCTTCGGGTGAAGTGGATTTGAGTCAAGATGAAGACATGATACCTTGGTTGAATTATACAATGGATGACTCTTTGCAACAGGGATATTGTTTTGATTTCACGCGTGATCTATCTGGGGTCACTGTAAATGAGCTCCCTGCCTCAAATAATTTTGCTCTAATGGGTAAAAGAAGTAACTGCAGTCAGATATGTAAGGACTCTCGAAAAAACCCTGCGCGTGATGTTTCAAGTCCAGCACAAGCAAATCTTACCAAGGGATCTACAGCTGGAGAAGTTGAGACTAGTAGGCTTAAAGGGAGTACCAGTCAGTTATACCCACCATCATCACAGCAGTGTCAAACATCATTTGCATCTATTAGCTCCAAAGTATCAGATATCACTGAAAATAATACAAGTAATGCAATCCGCCAAGCACCTTGTGGGGAAATCTCTCAGATTCCATCTTCCTCCAGTGGTTTTTGTAGCTTGCATATGCAGAAACAAGATCCAGTATTGCCCAGCAATAGCTCCAACATAATGAATTTCTCCCATTTTGCAAGACCTGCTGCTATTGTTAGAGCTAATATTCAGAGCATGAGTTTGATGTCTGGGTTGTCTGCAGCAAGATCAGAAAGCATGGGAACTAAGAATAAAGATGTTGATGCTAGTAACAGCTACCCTCCTGAATCGAGGCATGCTGATTTAAACGGTAAGAAGAACTGCCAGTTGGTTATGGAGCCATCAAAGGCTGAATTGAAACCATCGGAACCAAAATCCCTTGAACAAAAAGCTGCTTCTGCAAAACAGTCTGACCCTGCCTGCAAAGAGGAGGATGCCTTTAAGAATGATCAAACTTCCAATCAATTTCTCAGTGATAGTCGCACTAAAGAACAGCCAGTTGTTGAAAAAGTGATGGACCCGGTAGTAGCCTCTTCCTCCATTTGCTCGGGCAATGGTGTGAAGAGAGGTTCAGAAAATACAAATAAAAATTTGAAGCGAAAAAGTCAAGATACTGAGGACTCTGAGTGCCACAGTGAAGAAGTTGAGGAAGAATCAGTGGGTATTAAAAAGGCAGCTCCTGCACGAGGAAGTACAGGTTCCAAGAGAAGCCGTGCAGCTGAAGTGCATAATCTATCTGAAAGGAGGCGAAGAGACAGGATCAATGAGAAGATGCGTGCATTACAAGAACTCATACCAAATTGCAATAAGGTGGATAAAGCTTCGATGCTGGATGAGGCAATTGAGTATCTTAAAACACTTCAGCTTCAAGTTCAAATTATGTCAATGGGAACCGGTTTGTATGTGCCTCCAATGATGTTACATCCTGGAATGCCGCACATGCATGCACCGCACATGGCTCCATTCTCACCAATGGGATTTGGCATGCAAATGGGGCTAGGAATGCGTTATGGGATGAGTATGTCTGACATGAATAGTGGATCTCCTATGTTCCCAATGATTCAGGTGCCCCAGATGCAAGGAACTCAGTTCCCTGATTTACCTATATCTGGACCCACTGCTTTACATGCAACGGCAAGATCAAATCCTCAAGTTTTTGGGTTTCCTGGTCAGGGACTTCCTATGCCAATGCCAAATGCTCCAGTAGTTTCTTTGTCAGGAGGGCCTCTAATGAACGCATCAACTCCAGGACTAAATGCCTGTGGAGCTGCAGGACTTATGGAAACTGTGGATTTGGCTTCAGTCTCTGGCTTAAAGGATCCCATGCCAAATTTGAACTCGCAGGTTATGCCTAGCACAGGTGGCTGTAACTCCACAACTCAGATGTCTACTCAGTGTGAAGCAACAAATGTTGCATTTGATCAGTCAGCAGTGGTGCGAAACGGCGGGCATGCCCCCAGTGTTAATGACAGTGCAGCTGCGAATCCTGGCAAAGAAGATAACCTTGTGACTAGTAAATCTTTCAGGTTATGA 2211 0.4333 MPLYELYRLTKAKLDSKEINSTFATDQSSAPENDFFELVLENGQISMQSKSSRARKSPVCKSLPSHSPRSRDKDVGYDTNTRMGKLGDLDSGLNEIPMSVPSGEVDLSQDEDMIPWLNYTMDDSLQQGYCFDFTRDLSGVTVNELPASNNFALMGKRSNCSQICKDSRKNPARDVSSPAQANLTKGSTAGEVETSRLKGSTSQLYPPSSQQCQTSFASISSKVSDITENNTSNAIRQAPCGEISQIPSSSSGFCSLHMQKQDPVLPSNSSNIMNFSHFARPAAIVRANIQSMSLMSGLSAARSESMGTKNKDVDASNSYPPESRHADLNGKKNCQLVMEPSKAELKPSEPKSLEQKAASAKQSDPACKEEDAFKNDQTSNQFLSDSRTKEQPVVEKVMDPVVASSSICSGNGVKRGSENTNKNLKRKSQDTEDSECHSEEVEEESVGIKKAAPARGSTGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQIMSMGTGLYVPPMMLHPGMPHMHAPHMAPFSPMGFGMQMGLGMRYGMSMSDMNSGSPMFPMIQVPQMQGTQFPDLPISGPTALHATARSNPQVFGFPGQGLPMPMPNAPVVSLSGGPLMNASTPGLNACGAAGLMETVDLASVSGLKDPMPNLNSQVMPSTGGCNSTTQMSTQCEATNVAFDQSAVVRNGGHAPSVNDSAAANPGKEDNLVTSKSFRL 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3620 736 MobiDBLite consensus disorder prediction 303 477 - -
Dere01g3620 736 MobiDBLite consensus disorder prediction 303 317 - -
Dere01g3620 736 MobiDBLite consensus disorder prediction 47 94 - -
Dere01g3620 736 FunFam Basic helix-loop-helix transcription factor 459 522 - -
Dere01g3620 736 SMART finulus 470 519 IPR011598 GO:0046983
Dere01g3620 736 Pfam Helix-loop-helix DNA-binding domain 468 514 IPR011598 GO:0046983
Dere01g3620 736 MobiDBLite consensus disorder prediction 404 418 - -
Dere01g3620 736 PANTHER TRANSCRIPTION FACTOR PIF3 1 689 IPR044273 GO:0003700|GO:0006355
Dere01g3620 736 MobiDBLite consensus disorder prediction 419 434 - -
Dere01g3620 736 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 464 513 IPR011598 GO:0046983
Dere01g3620 736 Gene3D - 459 522 IPR036638 GO:0046983
Dere01g3620 736 CDD bHLH_AtPIF_like 464 526 IPR047265 -
Dere01g3620 736 MobiDBLite consensus disorder prediction 709 736 - -
Dere01g3620 736 MobiDBLite consensus disorder prediction 164 208 - -
Dere01g3620 736 MobiDBLite consensus disorder prediction 173 208 - -
Dere01g3620 736 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 461 524 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3620 Dere-ChrDere01 50475920 50479934 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3620 1 539 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 39.312 2.40e-81 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere01g3620 HLH 8.1e-14 No_clan