Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3616 ATGGGAAGACACTCTTGCTGTTACAAGCAGAAATTAAGGAAAGGCCTCTGGTCTCCAGAGGAAGACGAGAAGCTTCTGAATTACATCACCAAGCATGGCCATGGATGTTGGAGCTCCGTCCCCAAACTTGCCGGTTTGCAGAGGTGTGGTAAGAGCTGCAGGTTGAGGTGGATAAATTACCTGAGGCCTGATTTGAAAAGAGGAGCATTCTCACAGGAGGAAGAGAATTTAATAATTGAACTTCATGCAGTCCTAGGCAACAGGTGGTCACAGATTGCAGCTCAGTTACCCGGAAGAACTGACAATGAGATAAAAAATCTATGGAACTCCTGCCTCAAGAAGAAGCTCAGGCAAAGAGGCATTGACCCAAACACCCACAAGCCACTCTCTGAGGTTGAGAACGACAAGGACCAGCCACCGGCAGCCGACAAAAGCAATCAGAAGGCCTCAGTGGGATCCAATGAACTGAATTTAGCAGAGCCTGCAAAGCCAAAGGCAACTGCATTGCCTGCGGAGCGATACCTACTTGAAGTTTCTTCCAGCTCCAAGATCAACAATAGCTGCAGTAGCAGCAGCAATTTGACGAGCAACCAACCCGCCCAAGAGTTGTTCCTAGACAGCTCCATGACCAGTTGCAGACCTTCTGATATGATGGGTTACTTCTCTTTCCAGCAGTTGAACTATGCTCCAAATGTTGGGCTCTCCGCCAATCCCAACAGCTCTCTTTGCTTCATGTCGAGTTCCAGTTCTTCTCAGGTGATGTCAGAGCTGAATCCTAGTATGACTCCCGCTATGCTTAATTCTGTGTCAAGCTCAATTTTCCCAACAACACATGTAAATACCACTGTTAGTCTCCAATCTAATAATCCTTCCATATCCTCTCGCGATATTCATGGGGTTCAGAACTGGGAAGCCAGTACCTTCGGTAACAACGGCAGCAAAAGCAATGGGAGCAGTGGAAGTATCCAACTGCAAAGCAGCAATAACTTCGTCGAGAACACCACTATAGTATGGGGATTCGCAGAGCCTGTGAAGGCTGATAAAGATGCCCAGCTATCCTTACAAGCAGAACAAGACGACATGAAATGGTCTGAGTATCTAAACACCCCATTTTTTCTAGGAAACACAGCACAGAATCAAAATTCCCAATCTATCTACAGTGAGGTTAAACCAGAAACAGGCTTCATAACAGATGAATCAAGTACTAGTTGGCACCACAGCCAGCACCCATCCGTTTTTCAAGCTTCAGATATCTACACCAAGGATCTGCAAAGATTCTCAGTGGCTTATGGACAAACCCTTTAG 1305 0.4636 MGRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQEEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSEVENDKDQPPAADKSNQKASVGSNELNLAEPAKPKATALPAERYLLEVSSSSKINNSCSSSSNLTSNQPAQELFLDSSMTSCRPSDMMGYFSFQQLNYAPNVGLSANPNSSLCFMSSSSSSQVMSELNPSMTPAMLNSVSSSIFPTTHVNTTVSLQSNNPSISSRDIHGVQNWEASTFGNNGSKSNGSSGSIQLQSSNNFVENTTIVWGFAEPVKADKDAQLSLQAEQDDMKWSEYLNTPFFLGNTAQNQNSQSIYSEVKPETGFITDESSTSWHHSQHPSVFQASDIYTKDLQRFSVAYGQTL 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3616 434 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Dere01g3616 434 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Dere01g3616 434 FunFam Myb transcription factor 11 67 - -
Dere01g3616 434 Gene3D - 11 67 - -
Dere01g3616 434 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Dere01g3616 434 CDD SANT 17 61 IPR001005 -
Dere01g3616 434 PANTHER MYB DOMAIN PROTEIN 55 1 339 - -
Dere01g3616 434 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Dere01g3616 434 FunFam MYB transcription factor 68 140 - -
Dere01g3616 434 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Dere01g3616 434 MobiDBLite consensus disorder prediction 119 142 - -
Dere01g3616 434 MobiDBLite consensus disorder prediction 119 164 - -
Dere01g3616 434 SMART sant 13 63 IPR001005 -
Dere01g3616 434 SMART sant 66 114 IPR001005 -
Dere01g3616 434 Gene3D - 68 147 - -
Dere01g3616 434 CDD SANT 69 109 IPR001005 -
Dere01g3616 434 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Dere01g3616 434 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3616 Dere-ChrDere01 50424526 50426079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3616 1 434 MYB Transcription Factor Family AT1G09540 48.636 1.85e-122 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere01g3616 Myb_DNA-binding 2.9e-15 CL0123