Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3612 ATGAAGCTCTCATTCTCGCTGCTTCTGCTCACTCTTGCTCTGGTGTTTGCTACCGTCGCCGTAGCAGATCCCGACCCTCTTCAAGACCTCTGTGTCGCCGATCTTACCTCCGAGGTGAAAGTAAATGGGTTTGCCTGCAAGGATGCTTCAAAGGTAAATGCTTCAGACTTCTTCTCGAACATACTAGCCAATGCGGGCGCCACCAATAACACCTACGGCTCGTTGGTCACTGGAGCCAATGTTCAGAAAATCCCTGGACTCAACACCCTCGGTGTTTCTCTCTCACGCATTGACTACGCGCCCGGTGGTCTCAACCCACCCCACACGCACCCACGCGCCACCGAGGTAGTTTATGTGCTCGAAGGTGAACTTGATGTGGGCTTCATAACCACATCCAATCAACTCATATCCAAGCATATTCAAAAGGGTGAAATTTTTGTGTTCCCAAAAGGTTTGGTTCATTACCAAAAGAACAATGGGAATCAGGCTGCCTCTGTAATTGCAGCCTTCAATAGTCAGTTGCCTGGGACGCAGTCTATCGCCACCACCTTATTTGCCGCCACGCCGCCGGTGCCGGACAATGTTTTGACGAAAGCATTCCAGGTGGGTACCAAGGAGGTTGAGAAAATTAAGTCTAGACTTGCATCCACATAG 654 0.5031 MKLSFSLLLLTLALVFATVAVADPDPLQDLCVADLTSEVKVNGFACKDASKVNASDFFSNILANAGATNNTYGSLVTGANVQKIPGLNTLGVSLSRIDYAPGGLNPPHTHPRATEVVYVLEGELDVGFITTSNQLISKHIQKGEIFVFPKGLVHYQKNNGNQAASVIAAFNSQLPGTQSIATTLFAATPPVPDNVLTKAFQVGTKEVEKIKSRLAST 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3612 217 FunFam germin-like protein subfamily 2 member 1 22 216 - -
Dere01g3612 217 Pfam Cupin 63 207 IPR006045 -
Dere01g3612 217 Gene3D Jelly Rolls 22 217 IPR014710 -
Dere01g3612 217 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 18 212 - -
Dere01g3612 217 ProSitePatterns Germin family signature. 103 116 IPR019780 GO:0030145
Dere01g3612 217 SMART Cupin_1_3 59 208 IPR006045 -
Dere01g3612 217 Coils Coil 207 217 - -
Dere01g3612 217 PRINTS Germin signature 108 128 IPR001929 GO:0030145
Dere01g3612 217 PRINTS Germin signature 171 186 IPR001929 GO:0030145
Dere01g3612 217 PRINTS Germin signature 138 158 IPR001929 GO:0030145
Dere01g3612 217 SUPERFAMILY RmlC-like cupins 23 213 IPR011051 -
Dere01g3612 217 CDD cupin_OxOx 23 214 IPR001929 GO:0030145
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3612 Dere-ChrDere01 50392329 50393467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3612 1 214 Miscellaneous Gene Families AT3G05930 56.279 1.62e-87 256