Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3607 ATGACAAAAATGTCTGTTTGCTTCAAATTTCAAACAGAATGTGTCTCAGCGTTCTTTGATGGGTGGTTTTCTACAATCTCTGTTTCTCTGCATATTTGTTATATCATTCTTAGTGATGATTATCTATCTTTAAATAACCTGAAAAGTTTGGTAATCAATCTCAATATTCACGCTGAATTATCAAGTTCTAACATCAATGTGGTCGCCGGATTTCAAACAACAGTTTCTCAACGTAAAGGAGAGAGCAGAAGCAAGGCTTCATCTATTTCATTAGAATTTGATAAAAGTGCAAAAGCCTCATCGAAGTCAAAGGGAATTGTGATGCGACCGATGTCCGCGTTCGAGATTTCCTTCTCGGGCCAAGCCCTAAGCCGCGCATCTCTGGTAGTTAGTCTCATCCCGGCACGGTGCCCCTTTGACGACGCAGGTTTTCTCTGGCTTGTTTGCTTCTACAAAGAACTCACCTTTCTCATTTTTGCGGGAAACCGGTTGGCTCACCTCTGTTACGTGGGTGCTGATCTGTCTTCGATTTCTTGTAGAGCTGCTCCGCTCCCATCCAAGTTCTTGCTTCAAAGTTTATATACTTATGAATGGCTTGGAGGGAGCTTGGAAAAAAGGCGCTTTATGTGGGTGCTCTTGAGAATCTATATGAACTTTGCCAGAGCTTTGATTACAGTGCCATCTAGGCATGTTGTAAGGTCTTGTTCTTCATCTACCATAGCAGGAAAATCTATTTATGCATCTGCAAGATGCTTGCCTGAGTTCATCAGCCCCTTATGTACAGGATCAGCTGGTTTTTGCAATGGAACAAAAGAACATGGAATACAGTGTCGGTGCTTCCATGCTAGTCCAGAACGCTGGGCAATAAGAAATGATGAGGTATTTGGTTTGAAGACCCGGAAGAAGGAGAAGCGTGTGAGAAGGGACAGTAAAAATCAACCCCCTGTCGAAGCTCCATATGTTCCTCGTAATGTGGTCAAACCTACCAAATCTAATCCTGATAAAACAATTGAAATATTTGAAGGCATGACCATTGTTGAGCTGGCAAAGCGTACTGGAATGTCAGTGTCTTCTCTGCAAGATATTCTCAATAATGTTGGGGAAAAGGTTGAATCAGAGTTTGAGCCTCTTAGCATTGATATTGCAGAACTTGTTGCAATGGAAGTTGGTGTCAATGTTAAAAGGCTACATTCTGCTGAAGGTACAGAAATTTTACCACGCCCAGCAGTTGTAACAGTGATGGGTCATGTTGACCATGGTAAAACTTCCCTTCTTGATGCTTTGCGCCAAACATCAGTAGCAGCCAAGGAGGCCGGGGGCATAACTCAGCATCTAGGTGCCTTTGTGGTGGCCATGCCATCAGGAGCATCAATCACATTTCTTGACACCCCTGGTCATGCTGCATTTAGTGCAATGCGAGCAAGAGGTGCAGCCGTTACAGATGTGGTAGTGCTTGTTGTTGCTGCAGATGATGGGGTGATGCCTCAAACGCTTGAAGCCATGTCCCATGCTAAAGCTGCTAATGTTCCAATTGTAGTTGCAATAAATAAATGTGATAAACCAGGTGCAAATCCTGAAAGGGTAAAACTTCAGCTTGCATCAGAGGGTTTGTTGCTGGAGGAGATGGGTGGGGATGTTCAGGTGGTTGAAGTATCTGCAATTATGAAAACTGGACTGGATAACTTGGAGGAAGCTTTGCTCCTTCAGGCTGAAATGATGGATCTGAAAGCTCGAATTGATGGGCCTGCTCAAGCTTATGTGGTGGAAGCAAGACTTGATAAAGGACGAGGTCCATTGGCTACTGCTATAGTGAAGGCAGGGACTTTAGCTTGTGGTCAGCATGTGGTTGTAGGCTCAGAGTGGGGCAAAATAAGGGCTATTAGAGAAGTGACGGGGAAATTGACTGACAGAGCAACACCTGCAATGCCTGTTGAGATTGAAGGGCTTCGGGGCACTCCGATGGCTGGTGATGATGTTATTGTTGTTCATTCAGAGGATCGAGCTCGATTACTTAGTGCTGGTAGGAAGAGGAAATGTGAGAAAGATAGGCTTAAGAAAATGATTGAGGAAAGGGCAGATTCTTTGGAGTCATCTGATGATGTATCTCAGAGGGTTGAGATGCCAATAATAGTAAAAGCAGATGTGCAGGGCACTGTTCAAGCTGTCACAGATGCATTGAAAACTTTAAATAGTCCTCAGGTTTTCGTGAACGTTGTCCATGTTGGTGTAGGGCCTATTTCTCAATCTGATGTGGACCTAGCACAGGCTTGTAGTGCATGCGTAGTTGGATTCAACGTGAAGAGTCCACCTAGTACTGTTAGTCAGGCAGCAGGCCGTGCCAATATAAAGATAGTGCTGCACCGTGTGATTTACCACCTTTTGGAGGAGATAGGGAATTTGATAATAGAGAAGGCCCCGGGGACCTTCGAAACCCAGGTAGCTGGGGAGGCAGAGGTGCTTAATATCTTCGAGCTTAAAGGGAGGAGCAAGTCCAAGGGACCTGATGTGAAGATAGCTGGTTGTCGGGTTATTGATGGTTGTGTGACAAAATCAGGAACCATGAGGCTTCTGAGGAGTGGGGAAGTGATGTTTGAGGGAAGCTGTGCGTCTCTGAAGAGGGAGACGCAGGATGTGGAGACAGTGAAGAAGGGAAATGAGTGTGGAATGGTAATAAGTGATTGGCACGATTTCCAGGTTGGAGACGTCATTCAGTGCTTGGAACAAGTCGTGAGGAAGCCCAAGTTCATTAAGTCACAGAGTGGTGCTGTTCGAATTGAGTGCTGA 2784 0.4497 MTKMSVCFKFQTECVSAFFDGWFSTISVSLHICYIILSDDYLSLNNLKSLVINLNIHAELSSSNINVVAGFQTTVSQRKGESRSKASSISLEFDKSAKASSKSKGIVMRPMSAFEISFSGQALSRASLVVSLIPARCPFDDAGFLWLVCFYKELTFLIFAGNRLAHLCYVGADLSSISCRAAPLPSKFLLQSLYTYEWLGGSLEKRRFMWVLLRIYMNFARALITVPSRHVVRSCSSSTIAGKSIYASARCLPEFISPLCTGSAGFCNGTKEHGIQCRCFHASPERWAIRNDEVFGLKTRKKEKRVRRDSKNQPPVEAPYVPRNVVKPTKSNPDKTIEIFEGMTIVELAKRTGMSVSSLQDILNNVGEKVESEFEPLSIDIAELVAMEVGVNVKRLHSAEGTEILPRPAVVTVMGHVDHGKTSLLDALRQTSVAAKEAGGITQHLGAFVVAMPSGASITFLDTPGHAAFSAMRARGAAVTDVVVLVVAADDGVMPQTLEAMSHAKAANVPIVVAINKCDKPGANPERVKLQLASEGLLLEEMGGDVQVVEVSAIMKTGLDNLEEALLLQAEMMDLKARIDGPAQAYVVEARLDKGRGPLATAIVKAGTLACGQHVVVGSEWGKIRAIREVTGKLTDRATPAMPVEIEGLRGTPMAGDDVIVVHSEDRARLLSAGRKRKCEKDRLKKMIEERADSLESSDDVSQRVEMPIIVKADVQGTVQAVTDALKTLNSPQVFVNVVHVGVGPISQSDVDLAQACSACVVGFNVKSPPSTVSQAAGRANIKIVLHRVIYHLLEEIGNLIIEKAPGTFETQVAGEAEVLNIFELKGRSKSKGPDVKIAGCRVIDGCVTKSGTMRLLRSGEVMFEGSCASLKRETQDVETVKKGNECGMVISDWHDFQVGDVIQCLEQVVRKPKFIKSQSGAVRIEC 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3607 927 Gene3D Translation factors 579 696 - -
Dere01g3607 927 CDD mtIF2_IVc 815 905 - -
Dere01g3607 927 FunFam Translation initiation factor IF-2 403 578 - -
Dere01g3607 927 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 299 922 IPR015760 -
Dere01g3607 927 Pfam Elongation factor Tu GTP binding domain 411 567 IPR000795 GO:0003924|GO:0005525
Dere01g3607 927 NCBIfam translation initiation factor IF-2 334 910 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Dere01g3607 927 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 699 815 IPR036925 -
Dere01g3607 927 Gene3D Translation factors 809 912 - -
Dere01g3607 927 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 405 576 IPR027417 -
Dere01g3607 927 Hamap Translation initiation factor IF-2 [infB]. 53 913 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Dere01g3607 927 MobiDBLite consensus disorder prediction 300 328 - -
Dere01g3607 927 Pfam Translation-initiation factor 2 691 797 IPR023115 -
Dere01g3607 927 Gene3D - 702 807 IPR036925 -
Dere01g3607 927 SUPERFAMILY Translation proteins 580 662 IPR009000 -
Dere01g3607 927 CDD IF2_eIF5B 410 573 - -
Dere01g3607 927 SUPERFAMILY Translation proteins 810 912 IPR009000 -
Dere01g3607 927 CDD IF2_mtIF2_II 582 677 IPR044145 -
Dere01g3607 927 FunFam Translation initiation factor IF-2 702 809 - -
Dere01g3607 927 NCBIfam small GTP-binding protein domain 409 556 IPR005225 GO:0005525
Dere01g3607 927 Gene3D - 404 578 IPR027417 -
Dere01g3607 927 FunFam Translation initiation factor IF-2 810 914 - -
Dere01g3607 927 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 406 576 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3607 Dere-ChrDere01 50366766 50372886 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3607 397 891 Eukaryotic Initiation Factors Gene Family AT1G76810 26.401 1.03e-27 119