Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3601 ATGGCTTCTATTATGGGTTTTTGGTCCACCTTTCAGACCCCAACTCTGCAACTATGCAAAAAGGCAACAACTACTACATCAACGAGTTCTACGACCTCCTCTTCTCTGCAATTTTTTGAAACTATGTCTCACTTCAACAACGTTTCAAGAGCTCACTTTAGTATTAATGGAGGTGGCAGCTTCAAGAGCGGGTTTAAGCCTGGATTTAGTTTTGTTCGCTCGGCGATTGCCACGCCCAGTTCTTCTGTTTTGAGTGAAGAGGCTCTCACGGGTATAGGGCGTGGCTTCTCCGATGAAGACCCTTCGGATGATTCTAGCGAATATGGTGACTATGGCAATGTTTCTCAGACTGAGGCATTTTCTGCTGCTGCCAACGAGGATGAGCTCGACATTTCCAAGCTGGGCTTGCCTCAGCGCCTTGTGGATTCTCTCAAGGGACGTGGGATTACCCATCTTTTCCCCATTCAGAGAGCTGTATTACTCCCAGCACTAGGAGCTCGAGATCTCATTGCTCGGGCAAAGACTGGGACTGGGAAGACACTAGCATTTGGGATTCCAATTATCAAAGGCGTCAGTGAAGATGACCAAAGAAATTTTCAGAGGCGATCTAGTAGTCTTCCTAAAGCATTGGTCCTTGCGCCTACCAGGGAGTTGGCAAAGCAAGTAGAGAAAGAGATAAAAGAATCTGCACCCTATCTTAACACAGTTTGTGTTTATGGGGGTGTTTCTTATGTTACACAGCAAAATGCACTGTTACGTGGAGTTGATGTAGTGGTTGGAACTCCGGGTAGGATAATTGACTTGATAAATGGGAACAGCCTTAAACTGAATGAAGTGCAGTATCTGGTCCTTGATGAAGCCGATCAGATGCTTGCTGTCGGGTTTGAGGAGGATGTGGAAGTAATTTTAGAAAAGCTTCCATCTAAACGGCAGAGCATGCTTTTTTCTGCAACCATGCCTAGTTGGGTGAAGAAATTGTCAAGAAAATATCTAGACAATCCATTGACGATTGATTTGGTTGGTGAAGAAGAAGAAAAGCTTGCAGAAGGGATCAAACTTTTTGCTATATCAGCCACTGCCACATCTAAGCGGACAATTCTTTCTGATCTTATAACGGTATATGCAAAAGGTGGGAAGACTATTGTTTTTACACAGACCAAAAAAGATGCTGACGAAGTATCATTGGCGTTAACAAATAGCATAGCTTCTGAGGCACTGCATGGTGATATATCTCAGTATCAGAGGGAGAGAACTTTGAATGGTTTTCGGCAAGGAAAATTTACAGTGCTTGTTGCCACTGATGTTGCTGCTCGTGGACTTGATATTCCGAATGTTGATTTGGTTATCCACTATGAACTCCCCAATGATCCTGAGACTTTTGTACATCGCTCTGGTCGTACTGGACGTGCAGGAAAAGAAGGGACTGCCATTCTGATGTACACCAGTAGCCAGAGGAAAACAGTTAGATCCCTTGAACGTGACGTAGGATGCAAGTTTGAATTTATTAGTACACCTGGTGTTGAAGAGGTCTTGGAATCATCTGCCCAGCATATAGTTGCTATGTTAAAAGGGGTTCATCCTGAGTCTGTTGAATTTTTCACCCCAGCTGCGCAAAATCTGATTGAAGAACAGGGACCAAGAGCTTTAGCAGCTGCACTGGCGCATCTAAGTGGATTCTCCCTACCTCCCTCATCTCGGTCTCTTATCAACCATGAGCAGGGATGGATAACCTTGCAACTGACTCAAGATCCAGCTAATTCTGGGAGATTCCTATCTGCAAGATCAGTCACTGGATTTCTTTCTGATGTTTGTTCTTCTGCTGCCGATGCAGTTGGAAAGATATATTTAATTGCAGATGAAAGGGTTCAAGGAGCAGTTTTTGATCTTCCTGAGGATATTGCTAATGAGTTACTGAATAAGGAAATACCACATGGAAACGTTATATCCAAGATCACTAAGTTGCCTCCTTTGCAAGATGATGGGCCTCCAAGTGATAACTATGGGAGGTTTTCTGATAGAGATCGGAGTAACCGGGGAAGTTTTAAGGATAGAAGGGGTTTTAAAACCTTGCAGGGTCGGGAAGGGGGCCAATACTCTGATGATAACTTTGGTAATTCACATAGGAGAGGTGGTGGAAATTATAAAAGTAGCAACAGCTGGTCTAAAGCAGCAAAAAGTGGTGGGGATGATTGGCTGATTGGGGCTACACGGTCAAGCAGGTTCTCATCATCAGACAGAAGCTTTGGAGGGTCCTGTTTCAATTGTGGGCGATCTGGACATCGGGCATCAGAATGTCCCAACAATAGAAACTCTTGA 2316 0.4421 MASIMGFWSTFQTPTLQLCKKATTTTSTSSTTSSSLQFFETMSHFNNVSRAHFSINGGGSFKSGFKPGFSFVRSAIATPSSSVLSEEALTGIGRGFSDEDPSDDSSEYGDYGNVSQTEAFSAAANEDELDISKLGLPQRLVDSLKGRGITHLFPIQRAVLLPALGARDLIARAKTGTGKTLAFGIPIIKGVSEDDQRNFQRRSSSLPKALVLAPTRELAKQVEKEIKESAPYLNTVCVYGGVSYVTQQNALLRGVDVVVGTPGRIIDLINGNSLKLNEVQYLVLDEADQMLAVGFEEDVEVILEKLPSKRQSMLFSATMPSWVKKLSRKYLDNPLTIDLVGEEEEKLAEGIKLFAISATATSKRTILSDLITVYAKGGKTIVFTQTKKDADEVSLALTNSIASEALHGDISQYQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGTAILMYTSSQRKTVRSLERDVGCKFEFISTPGVEEVLESSAQHIVAMLKGVHPESVEFFTPAAQNLIEEQGPRALAAALAHLSGFSLPPSSRSLINHEQGWITLQLTQDPANSGRFLSARSVTGFLSDVCSSAADAVGKIYLIADERVQGAVFDLPEDIANELLNKEIPHGNVISKITKLPPLQDDGPPSDNYGRFSDRDRSNRGSFKDRRGFKTLQGREGGQYSDDNFGNSHRRGGGNYKSSNSWSKAAKSGGDDWLIGATRSSRFSSSDRSFGGSCFNCGRSGHRASECPNNRNS 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3601 771 SMART ultradead3 148 354 IPR014001 -
Dere01g3601 771 SUPERFAMILY Retrovirus zinc finger-like domains 742 769 IPR036875 GO:0003676|GO:0008270
Dere01g3601 771 CDD DEADc 140 338 - -
Dere01g3601 771 MobiDBLite consensus disorder prediction 666 690 - -
Dere01g3601 771 SMART c2hcfinal6 751 767 IPR001878 GO:0003676|GO:0008270
Dere01g3601 771 MobiDBLite consensus disorder prediction 695 724 - -
Dere01g3601 771 CDD GUCT_Hera 565 640 - -
Dere01g3601 771 Pfam DEAD/DEAH box helicase 153 326 IPR011545 GO:0003676|GO:0005524
Dere01g3601 771 Gene3D - 355 543 IPR027417 -
Dere01g3601 771 FunFam Nucleolar RNA helicase II 359 549 - -
Dere01g3601 771 CDD SF2_C_DEAD 351 480 - -
Dere01g3601 771 Pfam Zinc knuckle 751 767 IPR001878 GO:0003676|GO:0008270
Dere01g3601 771 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 366 518 IPR001650 -
Dere01g3601 771 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 160 337 IPR014001 -
Dere01g3601 771 ProSiteProfiles Zinc finger CCHC-type profile. 752 767 IPR001878 GO:0003676|GO:0008270
Dere01g3601 771 MobiDBLite consensus disorder prediction 736 751 - -
Dere01g3601 771 MobiDBLite consensus disorder prediction 651 771 - -
Dere01g3601 771 FunFam ATP-dependent RNA helicase RhlE 121 340 - -
Dere01g3601 771 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 111 692 - -
Dere01g3601 771 Pfam GUCT (NUC152) domain 558 658 IPR012562 GO:0003723|GO:0004386|GO:0005524
Dere01g3601 771 Gene3D - 743 771 - -
Dere01g3601 771 SMART helicmild6 391 471 IPR001650 -
Dere01g3601 771 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 208 492 IPR027417 -
Dere01g3601 771 Gene3D - 130 341 IPR027417 -
Dere01g3601 771 Pfam Helicase conserved C-terminal domain 363 471 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3601 Dere-ChrDere01 50337541 50343570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3601 155 493 Eukaryotic Initiation Factors Gene Family AT1G72730 39.429 5.67e-63 215